当前解析结果
SmilChr06G003165| 统一新 Gene ID | SmilChr06G003165 |
|---|---|
| 名称 | SmilChr06G003165 |
| 描述 | extra-large guanine nucleotide-binding protein 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44605901 - 44613237 / + |
| NCBI Gene ID | LOC130989875 |
|---|---|
| GeneID | 130989875 |
| locus_tag | - |
| NCBI Name | LOC130989875 |
| 原始查询 | LOC130989875 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | extra-large guanine nucleotide-binding protein 1 |
| 产物 | extra-large guanine nucleotide-binding protein 1 |
| Arabidopsis | AT2G23460 (XLG1)extra-large G-protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:816878] identity=67.6; qcov=0.798; evalue=0; confidence=high |
| Rice | Os12g0593000- identity=57.4; qcov=0.709; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0007186 (G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding) |
| KEGG | - |
| Pfam | PF00503 (G-alpha) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989875 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057770004.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057770004.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770004.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770004.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770004.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44606527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C63,C83 |
Chr6:44606692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr6:44606756 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B34 |
Chr6:44606756 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B34 |
Chr6:44606830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,C9 |
Chr6:44606946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B133,B135,B69,C62 |
Chr6:44606973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr6:44606980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B35,B68,C48 |
Chr6:44607013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B85,B94,C21,C57,D11 |
Chr6:44607024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr6:44607136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B135,B69,B76,C62 |
Chr6:44607164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770004.1PF00503
G-alpha 560-944 aa
XP_057770005.1PF00503
G-alpha 560-939 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770004.1 |
Pfam | PF00503 |
G-alpha | Domain | 560 | 944 | 5.7e-62 | 210.5 | G-protein alpha subunit |
XP_057770005.1 |
Pfam | PF00503 |
G-alpha | Domain | 560 | 939 | 4.4e-62 | 210.9 | G-protein alpha subunit |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。