Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003187`

染色体: Chr06 坐标: 44772308-44779839 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003187`
名称	SmilChr06G003187
描述	uncharacterized SmilChr06G003187
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44772308 - 44779839 / `+`

ID 对照

NCBI Gene ID	`LOC130989899`
GeneID	`130989899`
locus_tag	`-`
NCBI Name	`LOC130989899`
原始查询	`LOC130989899`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA glycosylase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838533]; symbol=AT1G19480; hit=AT1G19480; species=arabidopsis; confidence=high
产物	DNA glycosylase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838533]; symbol=AT1G19480; hit=AT1G19480; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19480` (AT1G19480) DNA glycosylase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838533] identity=56.8; qcov=0.825; evalue=5.3e-124; confidence=high
Rice	`Os05g0579100` (10A19I.4) - identity=70; qcov=0.502; evalue=8.67e-107; confidence=medium
GO	GO:0005634 (nucleus); GO:0006284 (base-excision repair); GO:0006285 (base-excision repair, AP site formation); GO:0006307 (DNA alkylation repair); GO:0008725 (DNA-3-methyladenine glycosylase activity); GO:0032131 (alkylated DNA binding); GO:0032993 (protein-DNA complex); GO:0043916 (DNA-7-methylguanine glycosylase activity)
KEGG	smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF00730 (HhH-GPD)
InterPro	-
eggNOG	-
NR	GeneID:130989899

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770040.1`
2	Chromosome	染色体	0.00000	`XP_057770040.1`
3	Centromere	着丝粒	0.00000	`XP_057770040.1`
4	Chromatin	染色质	0.00000	`XP_057770040.1`
5	Telomere	端粒	0.00000	`XP_057770040.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44772614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B6,C34,C61
`Chr6:44772623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr6:44772645`	`TC`	`T`	1bp_deletion	frameshift_variant	6	A10,B100,B111,B135,C49,C85
`Chr6:44772662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:44772680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B133,B47,B72
`Chr6:44772703`	`A`	`AGT`	2bp_insertion	frameshift_variant	17	B105,B115,B131,B138,B21,B53,B59,B62,B65,B72,C13,C28,C30,C51,C60,C73,C80
`Chr6:44772715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr6:44773109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C62
`Chr6:44773235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C12
`Chr6:44773243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr6:44773283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C33,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770040.1

412 aa

206

412

HhH-GPD

PF00730 HhH-GPD 198-341 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770040.1`	Pfam	`PF00730`	HhH-GPD	Domain	198	341	1.7e-18	67.7	HhH-GPD superfamily base excision DNA repair protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914057.1
TGAATGTGTAAAATTACTTTTATTGTATTTGAAAAATACTAGTAATAAAATTTTCGCACACTCTTTTGACATTGTAACACAAATCCCTTCATTCATCTATTGCACTGAAAACTGCAATTTTACCGCAATCTCCCCCAAATAAACAAAGTTTCCCTCTTTCGCCTTCTAATCCCCAGCCACCGTCGCCGCCGCCGTCGACACCCACGCCCTCACTGCCCCTCCTCGCTGTTCGCAGCTGTAGCTGATTCTCATGGGTGAGC...

CDS

1 records

下载 CDS FASTA

LOC130989899
ATGGGTGAGCAGACCCACACCCAAATCGAAGCCCTACATAAACCAGAATCACAAATCGAAACCACCAATTCGCAACAAGATTCTAAGTCCCAACCATCACCCTTCAAATCGTCGCCGAATTCCGACCCCAATCTCCAAATCTCTCATCCCCAGCCCGCCACCTCCGCAGCTGAGGCATCACCCGCCATCCCCACCGAGATCTCCCACAATAATCCCCACAATCCTTCCAAAATTCCAATTCGACCTCAAAAAATCCGTAA...

Protein

1 records

下载 Protein FASTA

XP_057770040.1
MGEQTHTQIEALHKPESQIETTNSQQDSKSQPSPFKSSPNSDPNLQISHPQPATSAAEASPAIPTEISHNNPHNPSKIPIRPQKIRKLSAQTTGVEKLATDDASASASSSSAISPASTAATSVAITSATPASAKNRRRSASHASRVLPQVIKPLSADGEIELAIRYIRAADPLLGPLIDTHPPPQFEIHHPPFLALTKSILYQQLAYKAGTSIYTRFVSLCGGEEAICPDSVLALSSQQLKQIGVSGRKASYLYDLANKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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