Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003085`

染色体: Chr01 坐标: 49689728-49693147 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003085`
名称	SmilChr01G003085
描述	glutamate receptor 2.7-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49689728 - 49693147 / `+`

ID 对照

NCBI Gene ID	`LOC130989933`
GeneID	`130989933`
locus_tag	`-`
NCBI Name	`LOC130989933`
原始查询	`LOC130989933`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamate receptor 2.7-like
产物	glutamate receptor 2.7-like
Arabidopsis	`AT2G29120` (GLR2.7) glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=43.7; qcov=0.973; evalue=0; confidence=medium
Rice	`Os09g0429400` (OsGLR2.3) - identity=44.2; qcov=1; evalue=0; confidence=medium
GO	GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6)
InterPro	-
eggNOG	-
NR	GeneID:130989933

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057770093.1`
2	Nucleus	细胞核	0.00000	`XP_057770093.1`
3	Chromosome	染色体	0.00000	`XP_057770093.1`
4	Centromere	着丝粒	0.00000	`XP_057770093.1`
5	Chromatin	染色质	0.00000	`XP_057770093.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49690205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B112,B21,B23,C53
`Chr1:49690316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B33,C10,C18,C25
`Chr1:49690333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr1:49690334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B123,D4
`Chr1:49690338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B23,B53,B79,C53
`Chr1:49690348`	`AG`	`A`	1bp_deletion	frameshift_variant	75	A11,A19,A21,A23,A8,B1,B104,B110,B112,B115,B117,B124,B125,B126,B13,B132,B133,B140,B15,B29,B32,B35,B37,B41,B43,B45,B49,B5,B50,B55,B56,B6,B62,B68,B69,B71,B73,B76,B77,B88,B92,B94,B95,B96,C1,C15,C19,C2,C22,C3,C31,C33,C34,C4,C40,C49,C5,C52,C54,C60,C63,C65,C67,C72,C76,C78,C80,C81,C85,D10,D11,D3,D4,D6,D7
`Chr1:49690350`	`A`	`ACT`	2bp_insertion	frameshift_variant	74	A11,A19,A21,A23,A8,B1,B104,B110,B112,B115,B117,B124,B125,B126,B13,B132,B133,B140,B15,B29,B32,B35,B37,B41,B43,B45,B49,B5,B50,B55,B56,B6,B62,B68,B69,B71,B73,B76,B77,B88,B92,B94,B95,B96,C1,C15,C19,C2,C22,C3,C31,C33,C34,C4,C40,C49,C5,C52,C54,C60,C63,C65,C67,C72,C78,C80,C81,C85,D10,D11,D3,D4,D6,D7
`Chr1:49690395`	`AG`	`A`	1bp_deletion	frameshift_variant	88	A1,A11,A13,A19,A21,A23,A4,B1,B104,B110,B115,B117,B124,B125,B126,B129,B13,B132,B136,B140,B15,B23,B29,B3,B32,B33,B35,B37,B38,B39,B41,B43,B45,B49,B5,B50,B54,B55,B56,B6,B60,B64,B68,B69,B71,B73,B76,B8,B88,B91,B92,B94,B95,B96,C1,C14,C15,C16,C19,C2,C3,C30,C31,C33,C34,C39,C4,C40,C47,C49,C5,C50,C54,C57,C60,C63,C65,C67,C7,C72,C78,C80,C81,C83,C85,D10,D11,D7
`Chr1:49690398`	`G`	`GA`	1bp_insertion	frameshift_variant	88	A1,A11,A13,A19,A21,A23,A4,B1,B104,B110,B115,B117,B124,B125,B126,B129,B13,B132,B136,B140,B15,B23,B29,B3,B32,B33,B35,B37,B38,B39,B41,B43,B45,B49,B5,B50,B54,B55,B56,B6,B64,B68,B69,B71,B72,B73,B76,B8,B88,B91,B92,B94,B95,B96,C1,C14,C15,C16,C19,C2,C3,C30,C31,C33,C34,C39,C4,C40,C47,C49,C5,C50,C54,C57,C60,C63,C65,C67,C7,C72,C78,C80,C81,C83,C85,D10,D11,D7
`Chr1:49690423`	`GTC`	`G`	2bp_deletion	frameshift_variant	5	A16,A4,B65,C37,C68
`Chr1:49690423`	`GTC`	`G`	2bp_deletion	CDS_variant	5	A16,A4,B65,C37,C68
`Chr1:49690426`	`C`	`CTG`	2bp_insertion	frameshift_variant	3	A16,C37,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770093.1

911 aa

456

911

Peripla_BP_6

ANF_receptor

Lig_chan-Glu_bd

SBP_bac_3

Lig_chan

PF13458 Peripla_BP_6 34-336 aa PF01094 ANF_receptor 48-398 aa PF10613 Lig_chan-Glu_bd 473-561 aa PF00497 SBP_bac_3 478-794 aa PF00060 Lig_chan 580-820 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770093.1`	Pfam	`PF13458`	Peripla_BP_6	Family	34	336	1e-17	65.6	Periplasmic binding protein
`XP_057770093.1`	Pfam	`PF01094`	ANF_receptor	Domain	48	398	3.1e-74	250.9	Receptor family ligand binding region
`XP_057770093.1`	Pfam	`PF10613`	Lig_chan-Glu_bd	Domain	473	561	2.7e-11	44.3	Ligated ion channel L-glutamate- and glycine-binding site
`XP_057770093.1`	Pfam	`PF00497`	SBP_bac_3	Domain	478	794	1.9e-13	51.0	Bacterial extracellular solute-binding proteins, family 3
`XP_057770093.1`	Pfam	`PF00060`	Lig_chan	Family	580	820	3.2e-31	108.8	Ligand-gated ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914110.1
AGACTTTATTGTTGCATTCCCATGCATAAACCAACAGTGAAATTTCTTCGAAATAAGGCACATTTCTTTGCGGCACGGCAGAAAATATGACAAGTCAACGCAATTTGTACAATATGATTTCTCCAAATATCGAAAATATAACTATAAGAAAAATTACTGTTTGAGTTTAATTAGCTTTCTTTGTTGTCTTGTTGTTCTTGAATCGTGCCTCTGCATTGCTGGATCCTTTCCCAATGCAGACTTCAAGATTCTGTTGCTTT...

CDS

1 records

下载 CDS FASTA

LOC130989933
ATGCAGACTTCAAGATTCTGTTGCTTTTCTATGCTTATCTTAATGAGCTTTTGCGTTGTTAGGCTTAACTATAGAAATGCAACTGCTGCAGAGGCTGATGTAGGAGTAATTCTTGATCTTGATACGCCTCTTGGGAAGATATGCAGCACTTGCATCGCTATGGCAATTGAAGATTTCTACTCCAACCGCAACCACAGCACCGTGATTGTGCCTCATTTCAGGGACTCGATGAGTGATGTTGTTGCTGCAGCTTCTGCTGC...

Protein

1 records

下载 Protein FASTA

XP_057770093.1
MQTSRFCCFSMLILMSFCVVRLNYRNATAAEADVGVILDLDTPLGKICSTCIAMAIEDFYSNRNHSTVIVPHFRDSMSDVVAAASAAIDLLKNTQVMAILGPQKSNQADFVIDIGERVRVPIISPATSPALSPKESPYFIRSAWCSSSQAKAIAAIIKGFGWKEVVVVYEDSNDGTGLLPHLSVNLLQSNVVVSNLSSISPSAENDQVLEELYNLKAMQTRVLIVDMLPDLASRFFQMAKEVGMMTEGYAWVISDPLTSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器