当前解析结果
SmilChr06G003235| 统一新 Gene ID | SmilChr06G003235 |
|---|---|
| 名称 | SmilChr06G003235 |
| 描述 | callose synthase 5 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45060323 - 45072588 / + |
| NCBI Gene ID | LOC130989947 |
|---|---|
| GeneID | 130989947 |
| locus_tag | - |
| NCBI Name | LOC130989947 |
| 原始查询 | LOC130989947 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | callose synthase 5 |
| 产物 | callose synthase 5 |
| Arabidopsis | AT2G13680 (CALS5)callose synthase 5 [Source:NCBI gene (formerly Entrezgene);Acc:815852] identity=75.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0182300 (GSL5)- identity=71.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process) |
| KEGG | - |
| Pfam | PF02364 (Glucan_synthase); PF04652 (Vta1); PF14288 (FKS1_dom1); PF25968 (CALS1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770109.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770109.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770109.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770109.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770109.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45062713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr6:45062714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:45062739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B104,B21 |
Chr6:45062799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:45062966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:45063331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B68,C12,D2 |
Chr6:45064804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr6:45065025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,D6 |
Chr6:45065509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr6:45065828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,C16,C18,C87 |
Chr6:45066681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B48,B68,B78,C75 |
Chr6:45066702 |
A |
ATC |
2bp_insertion | frameshift_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770109.1PF04652
Vta1 43-160 aa
PF14288
FKS1_dom1 324-435 aa
PF25968
CALS1 849-1026 aa
PF02364
Glucan_synthase 1033-1803 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770109.1 |
Pfam | PF04652 |
Vta1 | Family | 43 | 160 | 8.1e-10 | 39.6 | Vta1 like |
XP_057770109.1 |
Pfam | PF14288 |
FKS1_dom1 | Family | 324 | 435 | 3.1e-43 | 147.3 | 1,3-beta-glucan synthase subunit FKS1, domain-1 |
XP_057770109.1 |
Pfam | PF25968 |
CALS1 | Domain | 849 | 1026 | 6.8e-66 | 222.1 | Callose synthase 1 domain |
XP_057770109.1 |
Pfam | PF02364 |
Glucan_synthase | Family | 1033 | 1803 | 5.5e-234 | 779.8 | 1,3-beta-glucan synthase component |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。