Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003247`

染色体: Chr06 坐标: 45153715-45158845 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003247`
名称	SmilChr06G003247
描述	salicylic acid-binding protein 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45153715 - 45158845 / `+`

ID 对照

NCBI Gene ID	`LOC130989959`
GeneID	`130989959`
locus_tag	`-`
NCBI Name	`LOC130989959`
原始查询	`LOC130989959`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	salicylic acid-binding protein 2-like
产物	salicylic acid-binding protein 2-like
Arabidopsis	`AT2G23610` (MES3) methyl esterase 3 [Source:NCBI gene (formerly Entrezgene);Acc:816893] identity=55.5; qcov=0.995; evalue=1.75e-88; confidence=high
Rice	`Os01g0787600` (OsPOP4) - identity=44.7; qcov=1.2; evalue=9.79e-70; confidence=medium
GO	GO:0009694 (jasmonic acid metabolic process); GO:0009696 (salicylic acid metabolic process); GO:0080030 (methyl indole-3-acetate esterase activity); GO:0080031 (methyl salicylate esterase activity); GO:0080032 (methyl jasmonate esterase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130989959

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770123.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770124.1`
3	Nucleus	细胞核	0.00000	`XP_057770123.1`
4	Chromosome	染色体	0.00000	`XP_057770123.1`
5	Centromere	着丝粒	0.00000	`XP_057770123.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45153981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,C3,C31,C43
`Chr6:45157200`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B108,B137,B140,C12,C20,C44,C71
`Chr6:45157214`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A3,B24
`Chr6:45157214`	`TG`	`T`	1bp_deletion	CDS_variant	2	A3,B24
`Chr6:45158697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B45,B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770123.1

258 aa

129

258

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 3-111 aa PF00561 Abhydrolase_1 3-241 aa PF12697 Abhydrolase_6 5-246 aa

XP_057770124.1

212 aa

106

212

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 3-110 aa PF12146 Hydrolase_4 3-112 aa PF12697 Abhydrolase_6 5-109 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770123.1`	Pfam	`PF12146`	Hydrolase_4	Domain	3	111	2.7e-09	37.4	Serine aminopeptidase, S33
`XP_057770123.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	3	241	2.3e-19	70.7	alpha/beta hydrolase fold
`XP_057770123.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	5	246	4.7e-22	80.4	Alpha/beta hydrolase family
`XP_057770124.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	3	110	3.1e-19	70.3	alpha/beta hydrolase fold
`XP_057770124.1`	Pfam	`PF12146`	Hydrolase_4	Domain	3	112	1.2e-09	38.6	Serine aminopeptidase, S33
`XP_057770124.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	5	109	3.7e-20	74.2	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914140.1
ACATAATTATGAGATCCCCGTCAATTTTTTTTGTCTTGAACCTTCTCTAATTAGGCTTATATAGTTATATATACTCACATTAATAAATCACAATTCACAACACAAACCACATATATATCTATATATAGCAATGTCGAAGCATATTGTTCTAGTCCACGGCGCGTGCCACGGCGCATGGTGCTGGTACAAGCTCAAGCCGCTGCTGGAGGCGGCCGGCCACCGCGTCACGGCTCTCGACCTAGCCGCATCCGGCATCGACC...

XM_057914141.1
GAACCTTCTCTAATTAGGCTTATATAGTTATATATACTCACATTAATAAATCACAATTCACAACACAAACCACATATATATCTATATATAGCAATGTCGAAGCATATTGTTCTAGTCCACGGCGCGTGCCACGGCGCATGGTGCTGGTACAAGCTCAAGCCGCTGCTGGAGGCGGCCGGCCACCGCGTCACGGCTCTCGACCTAGCCGCATCCGGCATCGACCGCAGAAGCCTGCGAGAGCTCCGCACCCTCGCCGACTA...

CDS

2 records

下载 CDS FASTA

LOC130989959
ATGTCGAAGCATATTGTTCTAGTCCACGGCGCGTGCCACGGCGCATGGTGCTGGTACAAGCTCAAGCCGCTGCTGGAGGCGGCCGGCCACCGCGTCACGGCTCTCGACCTAGCCGCATCCGGCATCGACCGCAGAAGCCTGCGAGAGCTCCGCACCCTCGCCGACTACTCGCAGCCTCTGCTGGAGATGATGGCGGCGATTCCGGCGGAGGAGAAGGTGGTTGTGGTGGGCCACAGCCTAGGTGGGATGAATATTTCTCT...

Protein

2 records

下载 Protein FASTA

XP_057770123.1
MSKHIVLVHGACHGAWCWYKLKPLLEAAGHRVTALDLAASGIDRRSLRELRTLADYSQPLLEMMAAIPAEEKVVVVGHSLGGMNISLAMEMYPHKISVAIFLAAFMPDHTHPPSYVLDQYNERTPAEEWLDTEFLPYGSPEENLTSMFFGPNFLTSKLYQLSSLEDLELAKMLIRPSSLFLEDLSKRKPFTKQGYGSVKRVYAVCTEDKGIPVNFQRWQIETNGVDEVKVLENIDHMAMLSKPQDVCHCILEIANIYA

XP_057770124.1
MSKHIVLVHGACHGAWCWYKLKPLLEAAGHRVTALDLAASGIDRRSLRELRTLADYSQPLLEMMAAIPAEEKVVVVGHSLGGMNISLAMEMYPHKISVAIFLAAFMPDHTHPPSYVLDQDLELAKMLIRPSSLFLEDLSKRKPFTKQGYGSVKRVYAVCTEDKGIPVNFQRWQIETNGVDEVKVLENIDHMAMLSKPQDVCHCILEIANIYA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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