Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003264`

染色体: Chr06 坐标: 45277574-45278521 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003264`
名称	SmilChr06G003264
描述	nuclear transcription factor Y subunit B-3-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45277574 - 45278521 / `-`

ID 对照

NCBI Gene ID	`LOC130989979`
GeneID	`130989979`
locus_tag	`-`
NCBI Name	`LOC130989979`
原始查询	`LOC130989979`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit B-3-like
产物	nuclear transcription factor Y subunit B-3-like
Arabidopsis	`AT2G13570` (NF-YB7) nuclear factor Y, subunit B7 [Source:NCBI gene (formerly Entrezgene);Acc:815843] identity=62.2; qcov=0.815; evalue=8.66e-66; confidence=high
Rice	`Os03g0413000` (NFYB8) - identity=75.7; qcov=0.489; evalue=6.77e-58; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone); PF00808 (CBFD_NFYB_HMF)
InterPro	-
eggNOG	-
NR	GeneID:130989979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770149.1`
2	Chromosome	染色体	0.00000	`XP_057770149.1`
3	Centromere	着丝粒	0.00000	`XP_057770149.1`
4	Chromatin	染色质	0.00000	`XP_057770149.1`
5	Telomere	端粒	0.00000	`XP_057770149.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45277765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B140,B23,B3,C6
`Chr6:45277814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr6:45277848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr6:45277895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:45278117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr6:45278211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:45278231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr6:45278245`	`T`	`TC`	1bp_insertion	frameshift_variant	49	A19,A20,A24,A4,A6,B10,B113,B12,B120,B130,B132,B135,B25,B31,B35,B41,B42,B43,B51,B52,B54,B57,B65,B67,B72,B75,B84,B9,B90,B92,B98,C1,C11,C18,C28,C31,C34,C35,C39,C42,C47,C56,C60,C69,C70,C74,D10,D11,D6
`Chr6:45278265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B80,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770149.1

227 aa

114

227

Histone

CBFD_NFYB_HMF

PF00125 Histone 51-130 aa PF00808 CBFD_NFYB_HMF 66-130 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770149.1`	Pfam	`PF00125`	Histone	Domain	51	130	6.9e-08	33.5	Core histone H2A/H2B/H3/H4 domain
`XP_057770149.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	66	130	4.2e-27	94.9	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914166.1
ATTACATGTAATCAAACAAAATACACATAATTTTTTATTTTTTATTTTTTCTGAAAAGGAAAGTAAATCTCATCACCATTTTCTCAAAGATCATGAAGAGGGATAGAGATGATTTTGAAGATGATGAGAAGCCTCAGATTGGGCCCAGTAGAACCCCCTATAGAATCAGTCCTGACACTACCACATCATCATACCCTAACACAACCACCAATCAAAATCCCTACACCTCGAAAAACACGACCAACAATAATAACAACAAC...

CDS

1 records

下载 CDS FASTA

LOC130989979
ATGAAGAGGGATAGAGATGATTTTGAAGATGATGAGAAGCCTCAGATTGGGCCCAGTAGAACCCCCTATAGAATCAGTCCTGACACTACCACATCATCATACCCTAACACAACCACCAATCAAAATCCCTACACCTCGAAAAACACGACCAACAATAATAACAACAACAACAGCAACAACAAAGAACAGGACCGTTTCCTGCCCATAGCTAACGTGGGGCGGATCATGAAGAGGGTGATGCCGGCAAACGGGAAGATCTC...

Protein

1 records

下载 Protein FASTA

XP_057770149.1
MKRDRDDFEDDEKPQIGPSRTPYRISPDTTTSSYPNTTTNQNPYTSKNTTNNNNNNNSNNKEQDRFLPIANVGRIMKRVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEEYVHPLKKYLAKYREIEGEKLNVPKQQRVEQRMQHDQNSSNHLPYNSVYSAANLISPPPFVSADPPFPLPFSQNSIQTAALPQHDRVDDHW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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