Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003291`

染色体: Chr06 坐标: 45464309-45475299 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003291`
名称	SmilChr06G003291
描述	CBS domain-containing protein CBSCBSPB3-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45464309 - 45475299 / `+`

ID 对照

NCBI Gene ID	`LOC130990006`
GeneID	`130990006`
locus_tag	`-`
NCBI Name	`LOC130990006`
原始查询	`LOC130990006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CBS domain-containing protein CBSCBSPB3-like
产物	CBS domain-containing protein CBSCBSPB3-like
Arabidopsis	`AT3G52950` (AT3G52950) CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824461] identity=63.8; qcov=0.982; evalue=0; confidence=high
Rice	`Os12g0169400` (OsCBSCBSPB4) - identity=61.7; qcov=0.98; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00564 (PB1); PF00571 (CBS)
InterPro	-
eggNOG	-
NR	GeneID:130990006

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057770171.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057770171.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057770171.1`
4	Vacuole	液泡	0.20000	`XP_057770171.1`
5	Nucleus	细胞核	0.00000	`XP_057770171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45464600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,B126
`Chr6:45465547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,C10,C3,C31
`Chr6:45465963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:45466372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:45466380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B18,C35
`Chr6:45472948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr6:45473579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr6:45473631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr6:45473724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C40,C74
`Chr6:45474299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B70
`Chr6:45474413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:45474812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770171.1

553 aa

276

553

CBS

PB1

PF00571 CBS 75-121 aa PF00571 CBS 134-180 aa PF00571 CBS 243-290 aa PF00571 CBS 304-342 aa PF00564 PB1 426-505 aa

XP_057770173.1

553 aa

276

553

CBS

PB1

PF00571 CBS 75-121 aa PF00571 CBS 134-180 aa PF00571 CBS 243-290 aa PF00571 CBS 304-342 aa PF00564 PB1 426-505 aa

XP_057770174.1

552 aa

276

552

CBS

PB1

PF00571 CBS 74-120 aa PF00571 CBS 133-179 aa PF00571 CBS 242-289 aa PF00571 CBS 303-341 aa PF00564 PB1 425-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770171.1`	Pfam	`PF00571`	CBS	Domain	75	121	1.7e-35	121.8	CBS domain
`XP_057770171.1`	Pfam	`PF00571`	CBS	Domain	134	180	1.7e-35	121.8	CBS domain
`XP_057770171.1`	Pfam	`PF00571`	CBS	Domain	243	290	1.7e-35	121.8	CBS domain
`XP_057770171.1`	Pfam	`PF00571`	CBS	Domain	304	342	1.7e-35	121.8	CBS domain
`XP_057770171.1`	Pfam	`PF00564`	PB1	Domain	426	505	2.4e-13	50.5	PB1 domain
`XP_057770173.1`	Pfam	`PF00571`	CBS	Domain	75	121	1.7e-35	121.8	CBS domain
`XP_057770173.1`	Pfam	`PF00571`	CBS	Domain	134	180	1.7e-35	121.8	CBS domain
`XP_057770173.1`	Pfam	`PF00571`	CBS	Domain	243	290	1.7e-35	121.8	CBS domain
`XP_057770173.1`	Pfam	`PF00571`	CBS	Domain	304	342	1.7e-35	121.8	CBS domain
`XP_057770173.1`	Pfam	`PF00564`	PB1	Domain	426	505	2.4e-13	50.5	PB1 domain
`XP_057770174.1`	Pfam	`PF00571`	CBS	Domain	74	120	1.7e-35	121.8	CBS domain
`XP_057770174.1`	Pfam	`PF00571`	CBS	Domain	133	179	1.7e-35	121.8	CBS domain
`XP_057770174.1`	Pfam	`PF00571`	CBS	Domain	242	289	1.7e-35	121.8	CBS domain
`XP_057770174.1`	Pfam	`PF00571`	CBS	Domain	303	341	1.7e-35	121.8	CBS domain
`XP_057770174.1`	Pfam	`PF00564`	PB1	Domain	425	504	2.4e-13	50.5	PB1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914191.1
TATTAAATCATGGCTCAATTTATATAGTGAAATATCGATAAGCTATTTGGTGGGTTAGAAATGATTTCAGAGGAATCATTCATCAGCTTTCACCAGAAATAAGGGTGATCGACAACAGGAGAGATGATCGAGAGATTCTGCATGCATGATAATGAATATATCATCGCTCAAATCATATATGGATTAATATAGTTTTTTGGACTAAATTAAACAAAGAAAATGGAAAAATCGAGCGGGTCGCCGGCGCCGCTGCCGAGGCG...

XM_057914188.1
ATTAAATCATGGCTCAATTTATATAGTGAAATATCGATAAGCTATTTGGTGGGTTAGAAATGATTTCAGAGGAATCATTCATCAGCTTTCACCAGAAATAAGGGTGATCGACAACAGGAGAGATGATCGAGAGATTCTGCATGCATGATAATGAATATATCATCGCTCAAATCATATATGGATTAATATAGTTTTTTGGACTAAATTAAACAAAGAAAATGGAAAAATCGAGCGGGTCGCCGGCGCCGCTGCCGAGGCGC...

CDS

3 records

下载 CDS FASTA

LOC130990006
ATGGAAAAATCGAGCGGGTCGCCGGCGCCGCTGCCGAGGCGCAACAGTATGAGCATGCCGCCGTCGCAGAAGCGCAGTGCTCCCCCCGCCATGAAGAGGTCGTCGTCGGGGCCTCCTTCCGAGAGCGGCTCCGCCGCCGCAAGTTCCACAAATGCGAAACCCTCCTCCCCAAATTCCAGGTCTATTGTTTGGGAGAGGACGGTGAAGAAACTAAGGTTAAATAAGGCACTTACAATTCCGGAAGCAACCACTGTTTCGGA...

Protein

3 records

下载 Protein FASTA

XP_057770171.1
MEKSSGSPAPLPRRNSMSMPPSQKRSAPPAMKRSSSGPPSESGSAAASSTNAKPSSPNSRSIVWERTVKKLRLNKALTIPEATTVSEACRRMASRRVDAVLLTDSNVLLSGIVTDKDITTRVIAEDLKPENTIISKVMTRNPIFVNSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQFGSNLSASLTFIETLRERVFKPSLSTIISENSRVAIVAPSDPVQTAAKK...

XP_057770173.1
MEKSSGSPAPLPRRNSMSMPPSQKRSAPPAMKRSSSGPPSESGSAAASSTNAKPSSPNSRSIVWERTVKKLRLNKALTIPEATTVSEACRRMASRRVDAVLLTDSNVLLSGIVTDKDITTRVIAEDLKPENTIISKVMTRNPIFVNSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQFGSNLSASLTFIETLRERVFKPSLSTIISENSRVAIVAPSDPVQTAAKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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