当前解析结果
SmilChr06G003296| 统一新 Gene ID | SmilChr06G003296 |
|---|---|
| 名称 | SmilChr06G003296 |
| 描述 | protein disulfide-isomerase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45491188 - 45495630 / - |
| NCBI Gene ID | LOC130990010 |
|---|---|
| GeneID | 130990010 |
| locus_tag | - |
| NCBI Name | LOC130990010 |
| 原始查询 | LOC130990010 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein disulfide-isomerase-like |
| 产物 | protein disulfide-isomerase-like |
| Arabidopsis | AT1G77510 (PDIL1-2)PDI-like 1-2 [Source:NCBI gene (formerly Entrezgene);Acc:844087] identity=65.6; qcov=0.968; evalue=0; confidence=high |
| Rice | Os11g0199200 (ESP2)- identity=59.6; qcov=0.944; evalue=0; confidence=high |
| GO | GO:0003756 (protein disulfide isomerase activity); GO:0005783 (endoplasmic reticulum); GO:0006457 (protein folding); GO:0034976 (response to endoplasmic reticulum stress) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00085 (Thioredoxin); PF07912 (ERp29_N); PF13098 (Thioredoxin_2); PF13848 (Thioredoxin_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057770179.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 1.00000 | XP_057770179.1 |
| 3 | Melanosome | Melanosome | 0.20000 | XP_057770179.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770179.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770179.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45491556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,C62 |
Chr6:45492463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr6:45492678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B83,C44,C59,C82 |
Chr6:45492686 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | A18,B2 |
Chr6:45492686 |
C |
CT |
1bp_insertion | CDS_variant | 2 | A18,B2 |
Chr6:45492690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C41,C77 |
Chr6:45492725 |
G |
A |
EMS_canonical_SNV | stop_gained | 46 | A15,A19,A20,A23,A3,B102,B107,B110,B118,B12,B134,B137,B18,B19,B2,B23,B28,B51,B52,B55,B69,B74,B82,B83,B86,B97,C15,C2,C24,C33,C41,C42,C44,C46,C48,C52,C59,C61,C74,C75,C81,C82,C84,D1,D3,D8 |
Chr6:45495386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770179.1PF00085
Thioredoxin 31-137 aa
PF07912
ERp29_N 31-138 aa
PF13098
Thioredoxin_2 41-138 aa
PF13848
Thioredoxin_6 167-350 aa
PF00085
Thioredoxin 374-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770179.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 31 | 137 | 4.2e-58 | 194.5 | Thioredoxin |
XP_057770179.1 |
Pfam | PF07912 |
ERp29_N | Domain | 31 | 138 | 6.6e-06 | 27.0 | ERp29, N-terminal domain |
XP_057770179.1 |
Pfam | PF13098 |
Thioredoxin_2 | Domain | 41 | 138 | 2.9e-15 | 57.3 | Thioredoxin-like domain |
XP_057770179.1 |
Pfam | PF13848 |
Thioredoxin_6 | Domain | 167 | 350 | 2.5e-30 | 106.5 | Thioredoxin-like domain |
XP_057770179.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 374 | 475 | 4.2e-58 | 194.5 | Thioredoxin |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。