当前解析结果
SmilChr06G003301| 统一新 Gene ID | SmilChr06G003301 |
|---|---|
| 名称 | SmilChr06G003301 |
| 描述 | tubulin-folding cofactor C-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45543881 - 45549841 / + |
| NCBI Gene ID | LOC130990018 |
|---|---|
| GeneID | 130990018 |
| locus_tag | - |
| NCBI Name | LOC130990018 |
| 原始查询 | LOC130990018 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin-folding cofactor C-like |
| 产物 | tubulin-folding cofactor C-like |
| Arabidopsis | AT4G39920 (POR)C-CAP/cofactor C-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830151] identity=52.8; qcov=1.03; evalue=2.65e-104; confidence=high |
| Rice | Os02g0557000- identity=45.9; qcov=0.968; evalue=1.95e-89; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0007021 (tubulin complex assembly); GO:0007023 (post-chaperonin tubulin folding pathway); GO:0015631 (tubulin binding) |
| KEGG | - |
| Pfam | PF07986 (TBCC); PF16752 (TBCC_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990018 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770199.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770199.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057770199.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770199.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770199.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45547497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr6:45547562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr6:45547620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:45547631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C49,C7 |
Chr6:45547650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B129,B42,B43,B5,C52 |
Chr6:45547803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B62,C49,C54 |
Chr6:45547842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A25 |
Chr6:45547856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr6:45547883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B133 |
Chr6:45547888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C37,C54 |
Chr6:45547902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B110,B133,B29,C22 |
Chr6:45547948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770199.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
XP_057770200.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
XP_057770201.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
XP_057770202.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
XP_057770203.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
XP_057770204.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770199.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770199.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
XP_057770200.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770200.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
XP_057770201.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770201.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
XP_057770202.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770202.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
XP_057770203.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770203.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
XP_057770204.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 8.8e-23 | 81.5 | Tubulin-specific chaperone C N-terminal domain |
XP_057770204.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 2.5e-37 | 128.1 | Tubulin binding cofactor C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。