当前解析结果
SmilChr06G000052| 统一新 Gene ID | SmilChr06G000052 |
|---|---|
| 名称 | SmilChr06G000052 |
| 描述 | uncharacterized SmilChr06G000052 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 423545 - 428023 / + |
| NCBI Gene ID | LOC130990022 |
|---|---|
| GeneID | 130990022 |
| locus_tag | - |
| NCBI Name | LOC130990022 |
| 原始查询 | LOC130990022 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=34.1; qcov=0.084; evalue=9.02e-17; confidence=weak |
| Rice | Os12g0142900- identity=31.7; qcov=0.266; evalue=9.78e-65; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990022 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770207.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057770207.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770207.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770207.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770207.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:423600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C9 |
Chr6:423631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B91,C45 |
Chr6:423638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B87,C16,C63,D3 |
Chr6:424006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B49,B79,B99,C20 |
Chr6:424018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr6:424151 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B17 |
Chr6:424151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr6:424254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr6:424370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,D6 |
Chr6:424736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr6:424743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,B28,C66 |
Chr6:424756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B130,B54,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770207.1PF00078
RVT_1 509-669 aa
PF17919
RT_RNaseH_2 732-829 aa
PF17917
RT_RNaseH 758-861 aa
PF00075
RNase_H 911-1032 aa
PF13456
RVT_3 913-1032 aa
PF17921
Integrase_H2C2 1132-1185 aa
PF00665
rve 1205-1300 aa
PF31073
DUF8803 1427-1491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770207.1 |
Pfam | PF00078 |
RVT_1 | Domain | 509 | 669 | 5.6e-35 | 121.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057770207.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 732 | 829 | 2.4e-23 | 82.8 | RNase H-like domain found in reverse transcriptase |
XP_057770207.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 758 | 861 | 1.5e-23 | 83.7 | RNase H-like domain found in reverse transcriptase |
XP_057770207.1 |
Pfam | PF00075 |
RNase_H | Domain | 911 | 1032 | 3.1e-08 | 34.6 | RNase H |
XP_057770207.1 |
Pfam | PF13456 |
RVT_3 | Domain | 913 | 1032 | 2.6e-20 | 73.3 | Reverse transcriptase-like |
XP_057770207.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1132 | 1185 | 6.9e-09 | 36.4 | Integrase zinc binding domain |
XP_057770207.1 |
Pfam | PF00665 |
rve | Domain | 1205 | 1300 | 2.1e-12 | 47.9 | Integrase core domain |
XP_057770207.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1427 | 1491 | 1.8e-12 | 47.6 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。