当前解析结果
SmilChr01G003101| 统一新 Gene ID | SmilChr01G003101 |
|---|---|
| 名称 | SmilChr01G003101 |
| 描述 | D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49812765 - 49816609 / - |
| NCBI Gene ID | LOC130990027 |
|---|---|
| GeneID | 130990027 |
| locus_tag | - |
| NCBI Name | LOC130990027 |
| 原始查询 | LOC130990027 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like |
| 产物 | D-3-phosphoglycerate dehydrogenase 1%2C chloroplastic-like |
| Arabidopsis | AT1G17745 (PGDH)D-3-phosphoglycerate dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:838352] identity=76.9; qcov=0.929; evalue=0; confidence=high |
| Rice | Os04g0650800- identity=77.9; qcov=0.858; evalue=0; confidence=high |
| GO | GO:0004617 (phosphoglycerate dehydrogenase activity); GO:0006564 (L-serine biosynthetic process); GO:0051287 (NAD binding) |
| KEGG | smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00389 (2-Hacid_dh); PF01842 (ACT); PF02826 (2-Hacid_dh_C); PF07991 (KARI_N); PF19304 (PGDH_inter) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057770216.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057770216.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770216.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770216.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770216.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49813506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B78,C2,D7 |
Chr1:49813547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C44 |
Chr1:49814374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,C3 |
Chr1:49815850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:49815873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C48 |
Chr1:49816148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C57 |
Chr1:49816210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr1:49816254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:49816302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B7,B79,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770216.1PF00389
2-Hacid_dh 94-403 aa
PF02826
2-Hacid_dh_C 196-371 aa
PF07991
KARI_N 228-328 aa
PF19304
PGDH_inter 415-505 aa
PF01842
ACT 562-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770216.1 |
Pfam | PF00389 |
2-Hacid_dh | Domain | 94 | 403 | 2e-36 | 125.4 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
XP_057770216.1 |
Pfam | PF02826 |
2-Hacid_dh_C | Domain | 196 | 371 | 1.7e-65 | 220.4 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
XP_057770216.1 |
Pfam | PF07991 |
KARI_N | Family | 228 | 328 | 1.4e-05 | 25.5 | Acetohydroxy acid isomeroreductase, NADPH-binding domain |
XP_057770216.1 |
Pfam | PF19304 |
PGDH_inter | Domain | 415 | 505 | 5.7e-16 | 59.4 | D-3-phosphoglycerate dehydrogenase intervening domain |
XP_057770216.1 |
Pfam | PF01842 |
ACT | Domain | 562 | 623 | 2.1e-09 | 37.7 | ACT domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。