当前解析结果
SmilChr06G000243| 统一新 Gene ID | SmilChr06G000243 |
|---|---|
| 名称 | SmilChr06G000243 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 1620473 - 1624423 / - |
| NCBI Gene ID | LOC130990037 |
|---|---|
| GeneID | 130990037 |
| locus_tag | - |
| NCBI Name | LOC130990037 |
| 原始查询 | LOC130990037 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=28.7; qcov=0.661; evalue=2.41e-64; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=28.3; qcov=0.644; evalue=1.17e-60; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF00931 (NB-ARC); PF14223 (Retrotran_gag_2); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990037 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057770222.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057770222.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057770222.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770222.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770222.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:1620540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B19,C13,C87,D10 |
Chr6:1620599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr6:1620640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:1620643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,B67,C14 |
Chr6:1620676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C28 |
Chr6:1620683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,B67,C14 |
Chr6:1620702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C14 |
Chr6:1620721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr6:1620734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr6:1620776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,C28 |
Chr6:1620781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:1620895 |
G |
A |
EMS_canonical_SNV | stop_gained | 14 | B104,B132,B34,B58,B6,B65,B75,B80,C16,C22,C27,C55,C63,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770222.1PF14223
Retrotran_gag_2 25-186 aa
PF00098
zf-CCHC 217-234 aa
PF00931
NB-ARC 346-502 aa
PF23559
WHD_DRP 583-652 aa
PF23598
LRR_14 712-1031 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770222.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 25 | 186 | 1e-25 | 91.2 | gag-polypeptide of LTR copia-type |
XP_057770222.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 217 | 234 | 7e-07 | 29.8 | Zinc knuckle |
XP_057770222.1 |
Pfam | PF00931 |
NB-ARC | Domain | 346 | 502 | 2.3e-37 | 129.0 | NB-ARC domain |
XP_057770222.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 583 | 652 | 1.4e-20 | 73.8 | Disease resistance protein Winged helix domain |
XP_057770222.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 712 | 1031 | 8.6e-17 | 61.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。