当前解析结果
SmilChr01G003104| 统一新 Gene ID | SmilChr01G003104 |
|---|---|
| 名称 | SmilChr01G003104 |
| 描述 | mitogen-activated protein kinase kinase 5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49852539 - 49854024 / + |
| NCBI Gene ID | LOC130990046 |
|---|---|
| GeneID | 130990046 |
| locus_tag | - |
| NCBI Name | LOC130990046 |
| 原始查询 | LOC130990046 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase kinase 5-like |
| 产物 | mitogen-activated protein kinase kinase 5-like |
| Arabidopsis | AT1G51660 (MKK4)mitogen-activated protein kinase kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:841591] identity=70.9; qcov=0.971; evalue=5.49e-173; confidence=high |
| Rice | Os06g0191300 (OsMKK5)- identity=63.2; qcov=0.931; evalue=3.64e-147; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990046 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770229.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057770229.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057770229.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770229.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770229.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49853015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C78 |
Chr1:49853018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,C15,C78,C81 |
Chr1:49853033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:49853034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,C78 |
Chr1:49853059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,C15,C35,C78 |
Chr1:49853210 |
AG |
A |
1bp_deletion | frameshift_variant | 13 | A20,B114,B120,B136,B37,B43,B73,C15,C18,C3,C30,C35,C43 |
Chr1:49853264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:49853265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A3,B43,C43 |
Chr1:49853310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B132,B61,C37,C52,C78 |
Chr1:49853334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C52 |
Chr1:49853374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C52 |
Chr1:49853492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770229.1PF00069
Pkinase 64-317 aa
PF07714
PK_Tyr_Ser-Thr 65-313 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770229.1 |
Pfam | PF00069 |
Pkinase | Domain | 64 | 317 | 9.8e-66 | 222.5 | Protein kinase domain |
XP_057770229.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 65 | 313 | 1.2e-37 | 130.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。