当前解析结果
SmilChr06G000358| 统一新 Gene ID | SmilChr06G000358 |
|---|---|
| 名称 | SmilChr06G000358 |
| 描述 | potassium channel GORK-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2736902 - 2738324 / + |
| NCBI Gene ID | LOC130990050 |
|---|---|
| GeneID | 130990050 |
| locus_tag | - |
| NCBI Name | LOC130990050 |
| 原始查询 | LOC130990050 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | potassium channel GORK-like |
| 产物 | potassium channel GORK-like |
| Arabidopsis | AT5G37500 (GORK)gated outwardly-rectifying K+ channel [Source:NCBI gene (formerly Entrezgene);Acc:833728] identity=51.3; qcov=0.785; evalue=2.77e-36; confidence=medium |
| Rice | Os06g0250600 (OsK5.2)- identity=53; qcov=0.785; evalue=1.28e-34; confidence=medium |
| GO | GO:0005249 (voltage-gated potassium channel activity); GO:0005515 (protein binding); GO:0006813 (potassium ion transport) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990050 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770231.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057770231.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057770231.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770231.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770231.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2737928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr6:2737977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B111,B120,B94,C80 |
Chr6:2737985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,C24,C72 |
Chr6:2738000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr6:2738026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,C16,C34,D10 |
Chr6:2738064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,C26,C53,C55 |
Chr6:2738189 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr6:2738189 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B26 |
Chr6:2738210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B31,B73 |
Chr6:2738225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,B76,C8 |
Chr6:2738241 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B16,B31,B73 |
Chr6:2738241 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B16,B31,B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770231.1PF13637
Ank_4 54-103 aa
PF12796
Ank_2 54-135 aa
PF13857
Ank_5 69-123 aa
PF00023
Ank 84-114 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770231.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 54 | 103 | 2.9e-10 | 40.8 | Ankyrin repeats (many copies) |
XP_057770231.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 54 | 135 | 3.2e-12 | 47.6 | Ankyrin repeats (3 copies) |
XP_057770231.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 69 | 123 | 3.8e-10 | 40.6 | Ankyrin repeats (many copies) |
XP_057770231.1 |
Pfam | PF00023 |
Ank | Repeat | 84 | 114 | 1.1e-10 | 41.9 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。