当前解析结果
SmilChr06G000360| 统一新 Gene ID | SmilChr06G000360 |
|---|---|
| 名称 | SmilChr06G000360 |
| 描述 | uncharacterized SmilChr06G000360 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2760181 - 2762154 / + |
| NCBI Gene ID | LOC130990051 |
|---|---|
| GeneID | 130990051 |
| locus_tag | - |
| NCBI Name | LOC130990051 |
| 原始查询 | LOC130990051 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841006]; symbol=AT1G44050; hit=AT1G44050; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841006]; symbol=AT1G44050; hit=AT1G44050; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G44050 (AT1G44050)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:841006] identity=30.1; qcov=0.864; evalue=7.96e-25; confidence=low |
| Rice | Os07g0610200- identity=27.2; qcov=0.586; evalue=9.88e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990051 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770232.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057770232.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770232.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770232.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2760270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B139,B32,C48,D4 |
Chr6:2760285 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | A20 |
Chr6:2760285 |
TA |
T |
1bp_deletion | CDS_variant | 1 | A20 |
Chr6:2760296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B134,C48 |
Chr6:2760368 |
GA |
G |
1bp_deletion | frameshift_variant | 30 | A10,A15,A25,B11,B131,B21,B38,B4,B42,B47,B57,B64,B66,B7,B90,B92,B94,B99,C1,C27,C28,C30,C46,C56,C65,C71,C75,C84,D5,D6 |
Chr6:2760455 |
AAG |
A |
2bp_deletion | frameshift_variant | 2 | B60,C74 |
Chr6:2760455 |
AAG |
A |
2bp_deletion | CDS_variant | 2 | B60,C74 |
Chr6:2760475 |
A |
AT |
1bp_insertion | frameshift_variant | 53 | A20,A22,A3,A7,A8,A9,B115,B121,B122,B125,B130,B137,B138,B17,B20,B26,B38,B39,B48,B49,B51,B59,B60,B65,B67,B72,B82,B86,B88,B93,B94,B99,C13,C14,C15,C18,C20,C21,C27,C30,C31,C37,C40,C41,C45,C46,C49,C52,C53,C73,C75,C84,D3 |
Chr6:2760477 |
AG |
A |
1bp_deletion | frameshift_variant | 55 | A20,A22,A3,A7,A8,A9,B115,B121,B122,B125,B130,B137,B138,B17,B20,B26,B38,B39,B48,B49,B51,B59,B65,B67,B72,B82,B86,B88,B91,B93,B94,B99,C12,C13,C14,C15,C18,C20,C21,C27,C30,C31,C37,C40,C41,C45,C46,C49,C52,C53,C56,C73,C75,C84,D3 |
Chr6:2760479 |
G |
GAT |
2bp_insertion | frameshift_variant | 22 | A13,A16,A4,B118,B124,B133,B19,B29,B4,B71,B90,B91,B92,C12,C19,C43,C44,C47,C56,C68,C74,D8 |
Chr6:2760511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr6:2760512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770232.1PF03107
C1_2 82-128 aa
PF03107
C1_2 145-189 aa
PF03107
C1_2 202-251 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770232.1 |
Pfam | PF03107 |
C1_2 | Domain | 82 | 128 | 7.6e-31 | 106.9 | C1 domain |
XP_057770232.1 |
Pfam | PF03107 |
C1_2 | Domain | 145 | 189 | 7.6e-31 | 106.9 | C1 domain |
XP_057770232.1 |
Pfam | PF03107 |
C1_2 | Domain | 202 | 251 | 7.6e-31 | 106.9 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。