Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002025`

染色体: Chr06 坐标: 26231641-26239943 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002025`
名称	SmilChr06G002025
描述	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	26231641 - 26239943 / `-`

ID 对照

NCBI Gene ID	`LOC130990079`
GeneID	`130990079`
locus_tag	`-`
NCBI Name	`LOC130990079`
原始查询	`LOC130990079`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
产物	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
Arabidopsis	`AT5G67170` (AT5G67170) SEC-C motif-containing protein / OTU-like cysteine protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:836852] identity=49.9; qcov=1; evalue=1.56e-102; confidence=high
Rice	`Os04g0670400` - identity=63.6; qcov=0.362; evalue=1.37e-48; confidence=low
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF02338 (OTU); PF02810 (SEC-C)
InterPro	-
eggNOG	-
NR	GeneID:130990079

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770261.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770261.1`
3	Cytoplasm	细胞质	0.80000	`XP_057770261.1`
4	Chromosome	染色体	0.00000	`XP_057770261.1`
5	Centromere	着丝粒	0.00000	`XP_057770261.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:26233541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr6:26234419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,D4
`Chr6:26238640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr6:26239219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770261.1

419 aa

210

419

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 349-366 aa

XP_057770262.1

416 aa

208

416

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 346-363 aa

XP_057770263.1

415 aa

208

415

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 345-362 aa

XP_057770264.1

412 aa

206

412

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 342-359 aa

XP_057770265.1

395 aa

198

395

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 325-342 aa

XP_057770266.1

392 aa

196

392

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 322-339 aa

XP_057770267.1

391 aa

196

391

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 321-338 aa

XP_057770268.1

388 aa

194

388

OTU

SEC-C

PF02338 OTU 49-160 aa PF02810 SEC-C 318-335 aa

XP_057770269.1

334 aa

167

334

OTU

SEC-C

PF02338 OTU 2-75 aa PF02810 SEC-C 264-281 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770261.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.8e-14	55.1	OTU-like cysteine protease
`XP_057770261.1`	Pfam	`PF02810`	SEC-C	Domain	349	366	1.7e-06	28.5	SEC-C motif
`XP_057770262.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.7e-14	55.1	OTU-like cysteine protease
`XP_057770262.1`	Pfam	`PF02810`	SEC-C	Domain	346	363	1.7e-06	28.5	SEC-C motif
`XP_057770263.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.8e-14	55.1	OTU-like cysteine protease
`XP_057770263.1`	Pfam	`PF02810`	SEC-C	Domain	345	362	1.7e-06	28.5	SEC-C motif
`XP_057770264.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.7e-14	55.2	OTU-like cysteine protease
`XP_057770264.1`	Pfam	`PF02810`	SEC-C	Domain	342	359	1.7e-06	28.5	SEC-C motif
`XP_057770265.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.8e-14	55.1	OTU-like cysteine protease
`XP_057770265.1`	Pfam	`PF02810`	SEC-C	Domain	325	342	1.6e-06	28.6	SEC-C motif
`XP_057770266.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.7e-14	55.1	OTU-like cysteine protease
`XP_057770266.1`	Pfam	`PF02810`	SEC-C	Domain	322	339	1.6e-06	28.6	SEC-C motif
`XP_057770267.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.7e-14	55.1	OTU-like cysteine protease
`XP_057770267.1`	Pfam	`PF02810`	SEC-C	Domain	321	338	1.6e-06	28.6	SEC-C motif
`XP_057770268.1`	Pfam	`PF02338`	OTU	Domain	49	160	1.7e-14	55.2	OTU-like cysteine protease
`XP_057770268.1`	Pfam	`PF02810`	SEC-C	Domain	318	335	1.6e-06	28.6	SEC-C motif
`XP_057770269.1`	Pfam	`PF02338`	OTU	Domain	2	75	5.6e-06	27.6	OTU-like cysteine protease
`XP_057770269.1`	Pfam	`PF02810`	SEC-C	Domain	264	281	1.3e-06	28.9	SEC-C motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057914283.1
TTAAATACATGTCTATAAATCTAGCGATCCCGAAAGTGTTCTGCCCCACTTCTGCACTTGTTCATCTCTACTCTTCTTTTCTTTTTCTTTTTTTTATATCCCTCATCAATAAATCTCACTCTTTTGAAACAATTAAAGTTGATCGTAATATAGTTAAGCAAATCACCATGTTTTTCACTTGGATAAAATAAAATACTAATAATGAGATAGAAGCAGAAAGACCCCTAAAATCAATCCCAATTCTAAAATTCCAACCCTTA...

XM_057914278.1
CTATAAATCTAGCGATCCCGAAAGTGTTCTGCCCCACTTCTGCACTTGTTCATCTCTACTCTTCTTTTCTTTTTCTTTTTTTTATATCCCTCATCAATAAATCTCACTCTTTTGAAACAATTAAAGTTGATCGTAATATAGTTAAGCAAATCACCATGTTTTTCACTTGGATAAAATAAAATACTAATAATGAGATAGAAGCAGAAAGACCCCTAAAATCAATCCCAATTCTAAAATTCCAACCCTTAATTTGAAAATTC...

CDS

9 records

下载 CDS FASTA

LOC130990079
ATGGCTAAAGCAAAGCATCAAAAGCCCAAACCTAGAAAACCAGCCAAACAGACCCACAGCAAGAAGCGGGGAGGAAAGCAAAACGATGTTTCTGAATTGCGGGAGCAGCTTGATGCTTTGGGTTTGAAGATAATTCAGGTGACTGCAGATGGTAATTGCTTTTTCAGGGCATTGGCTGATCAATTGGAAGGCGATGAGGATCAGCATGACAAGTATCGCGGCATGGTGGTCGGATTTATTAAGGATAACCGCGAAATGTT...

Protein

9 records

下载 Protein FASTA

XP_057770261.1
MAKAKHQKPKPRKPAKQTHSKKRGGKQNDVSELREQLDALGLKIIQVTADGNCFFRALADQLEGDEDQHDKYRGMVVGFIKDNREMFEPFVEDEVPFEEYCHSMGEDGTWAGHMELQAACLVTRSNICIHRNMSPRWYIQNFDKHEALMIHLSYHDGEHYNSVRSKEDTCSGPARPIVIKLCQKGDADLSAKSNQPKAAARKSREECRRNALSEDSIKMVKAGSGCEDARKVEQTPNRNSKMRYHKPDMSSFVSTSDGVL...

XP_057770262.1
MAKAKHQKPKPRKPAKQTHSKKRGGKQNDVSELREQLDALGLKIIQVTADGNCFFRALADQLEGDEDQHDKYRGMVVGFIKDNREMFEPFVEDEVPFEEYCHSMGEDGTWAGHMELQAACLVTRSNICIHRNMSPRWYIQNFDKHEALMIHLSYHDGEHYNSVRSKEDTCSGPARPIVIKLCQKGDADLSAKSNQPKAAARKSREECRRNALSEDSIKMVKAGSGCEDARKVEQTPNRNSKMRYHKPDMSSFVSTSDGVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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