当前解析结果
SmilChr06G001910| 统一新 Gene ID | SmilChr06G001910 |
|---|---|
| 名称 | SmilChr06G001910 |
| 描述 | serine/threonine-protein kinase D6PK-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 23086690 - 23090476 / - |
| NCBI Gene ID | LOC130990087 |
|---|---|
| GeneID | 130990087 |
| locus_tag | - |
| NCBI Name | LOC130990087 |
| 原始查询 | LOC130990087 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase D6PK-like |
| 产物 | serine/threonine-protein kinase D6PK-like |
| Arabidopsis | AT5G47750 (D6PKL2)D6 protein kinase like 2 [Source:NCBI gene (formerly Entrezgene);Acc:834826] identity=72.7; qcov=0.708; evalue=0; confidence=high |
| Rice | Os09g0258500- identity=71.6; qcov=0.698; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990087 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770276.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770276.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057770276.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770276.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770276.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:23087040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C23 |
Chr6:23087124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B140,B3,B37,D7 |
Chr6:23087223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr6:23087392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr6:23087427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:23087457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C22 |
Chr6:23087468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B4,C41 |
Chr6:23088245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr6:23088311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B132,C1 |
Chr6:23088380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:23088420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C19 |
Chr6:23088852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B51,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770276.1PF00069
Pkinase 281-433 aa
PF07714
PK_Tyr_Ser-Thr 282-430 aa
PF00069
Pkinase 512-615 aa
PF07714
PK_Tyr_Ser-Thr 519-602 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770276.1 |
Pfam | PF00069 |
Pkinase | Domain | 281 | 433 | 6.6e-58 | 196.9 | Protein kinase domain |
XP_057770276.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 282 | 430 | 1.9e-26 | 93.7 | Protein tyrosine and serine/threonine kinase |
XP_057770276.1 |
Pfam | PF00069 |
Pkinase | Domain | 512 | 615 | 6.6e-58 | 196.9 | Protein kinase domain |
XP_057770276.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 519 | 602 | 1.9e-26 | 93.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。