当前解析结果
SmilChr06G001914| 统一新 Gene ID | SmilChr06G001914 |
|---|---|
| 名称 | SmilChr06G001914 |
| 描述 | uncharacterized SmilChr06G001914 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 23120011 - 23162188 / - |
| NCBI Gene ID | LOC130990101 |
|---|---|
| GeneID | 130990101 |
| locus_tag | - |
| NCBI Name | LOC130990101 |
| 原始查询 | LOC130990101 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834048]; symbol=AT5G40500; hit=AT5G40500; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834048]; symbol=AT5G40500; hit=AT5G40500; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G40500 (AT5G40500)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834048] identity=76.7; qcov=0.756; evalue=5.7e-48; confidence=medium |
| Rice | Os04g0482900- identity=78.3; qcov=0.58; evalue=6.43e-39; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990101 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770291.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057770291.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057770291.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770291.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:23120479 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B11,B114,B17,C30 |
Chr6:23120479 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B11,B114,B17,C30 |
Chr6:23120480 |
A |
AT |
1bp_insertion | frameshift_variant | 94 | A11,A18,A19,A20,A22,A24,A25,A5,B1,B10,B100,B102,B103,B106,B110,B118,B121,B122,B123,B125,B126,B128,B13,B14,B140,B15,B16,B19,B2,B20,B21,B23,B24,B27,B28,B30,B35,B37,B4,B42,B43,B45,B46,B50,B51,B53,B57,B59,B60,B62,B64,B66,B67,B68,B70,B72,B74,B77,B80,B84,B86,B90,B91,B92,B94,B98,C12,C18,C19,C2,C27,C32,C35,C41,C44,C48,C49,C5,C56,C58,C63,C64,C66,C68,C71,C81,C86,C87,D10,D11,D3,D6,D7,D8 |
Chr6:23120491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B65,B93,C17,D5 |
Chr6:23120510 |
AT |
A |
1bp_deletion | frameshift_variant | 11 | B38,B39,B42,B49,B75,B79,B95,B99,C51,C79,D1 |
Chr6:23161201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:23161734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B9 |
Chr6:23161836 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B77 |
Chr6:23161836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:23161970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。