当前解析结果
SmilChr01G003111| 统一新 Gene ID | SmilChr01G003111 |
|---|---|
| 名称 | SmilChr01G003111 |
| 描述 | uncharacterized SmilChr01G003111 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49920471 - 49922006 / + |
| NCBI Gene ID | LOC130990104 |
|---|---|
| GeneID | 130990104 |
| locus_tag | - |
| NCBI Name | LOC130990104 |
| 原始查询 | LOC130990104 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0286500; species=rice; confidence=low |
| 产物 | hit=Os04g0286500; species=rice; confidence=low |
| Arabidopsis | AT1G66235 (AT1G66235)no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=22.2; qcov=0.844; evalue=2.06e-06; confidence=weak |
| Rice | Os04g0286500- identity=29.8; qcov=0.787; evalue=1.26e-18; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990104 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770296.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770296.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770296.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770296.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770296.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49920858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B38,B39,B63,C15 |
Chr1:49920863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B59,C1,C29,C6 |
Chr1:49920922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:49920943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr1:49920990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,B96,C35 |
Chr1:49921032 |
AAG |
A |
2bp_deletion | frameshift_variant | 2 | C27,C29 |
Chr1:49921032 |
AAG |
A |
2bp_deletion | CDS_variant | 2 | C27,C29 |
Chr1:49921034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B98 |
Chr1:49921045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr1:49921114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B80,C18 |
Chr1:49921115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C18 |
Chr1:49921121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B80,C18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。