Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001429`

染色体: Chr06 坐标: 15121295-15124613 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001429`
名称	SmilChr06G001429
描述	inositol oxygenase 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15121295 - 15124613 / `-`

ID 对照

NCBI Gene ID	`LOC130990117`
GeneID	`130990117`
locus_tag	`-`
NCBI Name	`LOC130990117`
原始查询	`LOC130990117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inositol oxygenase 2-like
产物	inositol oxygenase 2-like
Arabidopsis	`AT1G14520` (MIOX1) myo-inositol oxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838014] identity=76.2; qcov=1; evalue=4.79e-142; confidence=high
Rice	`Os06g0561000` (OsMIOX) - identity=75.3; qcov=1; evalue=1.1e-140; confidence=high
GO	GO:0005506 (iron ion binding); GO:0005737 (cytoplasm); GO:0019310 (inositol catabolic process); GO:0050113 (inositol oxygenase activity)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF05153 (MIOX)
InterPro	-
eggNOG	-
NR	GeneID:130990117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770301.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770301.1`
3	Mitochondrion	线粒体	0.80000	`XP_057770300.1`
4	Chloroplast	叶绿体	0.40000	`XP_057770300.1`
5	Chloroplast stroma	叶绿体基质	0.20000	`XP_057770300.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15121894`	`G`	`GT`	1bp_insertion	frameshift_variant	17	B100,B120,B17,B63,B8,C10,C13,C17,C22,C38,C41,C57,C58,C83,C84,C85,D9
`Chr6:15122059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,C13,C57
`Chr6:15122116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B107,C43,C46
`Chr6:15122251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C27,D4
`Chr6:15122350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15122519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr6:15122548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,B68,B69,B91
`Chr6:15122565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:15122595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B107,C43,C46
`Chr6:15122599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,B59,D2
`Chr6:15122927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr6:15124459`	`T`	`TG`	1bp_insertion	CDS_variant	2	B59,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770300.1

340 aa

170

340

MIOX

PF05153 MIOX 91-340 aa

XP_057770301.1

239 aa

120

239

MIOX

PF05153 MIOX 2-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770300.1`	Pfam	`PF05153`	MIOX	Family	91	340	1.5e-122	408.7	Myo-inositol oxygenase
`XP_057770301.1`	Pfam	`PF05153`	MIOX	Family	2	239	2.4e-118	394.9	Myo-inositol oxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914317.1
AAAATTTGTTGTCGAAAAGCAAATTCAACTGTTGTGCTTTGTAGTTGGGAAAAATTCAAGTACACTGCCTTTCTGAAAATGGAAAGATAGATGGGAAGGATGATTTATGTATCGTAGGTGAAGAAGGGCCTCTTTACAACATCACAAAACATCCATGGCAACTAGTTTTCGATGCCCTTTGCCTCTCAAACATGGTTTATTACGTCATTCCTTTTCCAAGACTTGTTCATTTCAAATGTTGGGAAACACAGGGATTTTAC...

XM_057914318.1
ATTCTTAATACTCGTGGGTTGTAATTGGGTGAAACGCGACATAAATGAAATTCACTTTTTTTTTTCTTTCTCTCATCTATCTCTAATATTCAACATTATACTTTTTTTTTCACATTGTCTTAGTTTGTTGGTGTATAAATAAGTAGATGTTATCTTTTTTCACAAAAAATTTACATGATTATTTAATTATAATATATTTAAGTTACGCAAATTCTTGCGTACACTCGGTAAGTATACATAAAGTGTTGGGTTATGGATTT...

CDS

2 records

下载 CDS FASTA

LOC130990117
ATGGCAACTAGTTTTCGATGCCCTTTGCCTCTCAAACATGGTTTATTACGTCATTCCTTTTCCAAGACTTGTTCATTTCAAATGTTGGGAAACACAGGGATTTTACTCAAGCTTCAATGCACATCACAAAATTCTTCAAGATATGGTTTATGGGTGGATGTTGAGGATGTCAAGACTGATGAACTCATTCTCGATCAAGGGTTTGTAGTTCCTCACACCAATTCATATGGCCATTCTTTCAGGGATTATGATGCGGAGAA...

LOC130990117
ATGAACCAAACATATGAGTTTGCAAAGCGCAGGAGAGAGGAGTATGGGTGGTTGGATCGTGTGGAGATGAGCATCTGGGAATGCTGTGAGCTCCTGAATGAAGTGGTGGATGAGAGCGATCCTGATTTGGATGAGCCTCAGATTCAGCATTTGCTCCAATCTGCAGAGGCCATTAGGAGAGATTACCCTAATCAAGACTGGCTGCATCTCACTGCTCTCATTCATGATCTTGGGAAGGTTCTTCTTCTACCTAGCTTTGG...

Protein

2 records

下载 Protein FASTA

XP_057770300.1
MATSFRCPLPLKHGLLRHSFSKTCSFQMLGNTGILLKLQCTSQNSSRYGLWVDVEDVKTDELILDQGFVVPHTNSYGHSFRDYDAENQRRERVEELYRLSHMNQTYEFAKRRREEYGWLDRVEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRRDYPNQDWLHLTALIHDLGKVLLLPSFGALPQWAVVGDTFPLGCAFDPSIVHYEHFESSPDYKNPAYNTKLGVYREGCGLDNVVMSWGHDDYMYLVAKEN...

XP_057770301.1
MNQTYEFAKRRREEYGWLDRVEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRRDYPNQDWLHLTALIHDLGKVLLLPSFGALPQWAVVGDTFPLGCAFDPSIVHYEHFESSPDYKNPAYNTKLGVYREGCGLDNVVMSWGHDDYMYLVAKENKTTLPSHALFIIRYHSFYALHKSGAYKYLMNEEDAENLKWLQIFNKYDLYSKSKSVVDVDKVKPYYISLIEKYFPAKLKW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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