Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001433`

染色体: Chr06 坐标: 15149849-15153251 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001433`
名称	SmilChr06G001433
描述	target of rapamycin complex subunit LST8-1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15149849 - 15153251 / `+`

ID 对照

NCBI Gene ID	`LOC130990123`
GeneID	`130990123`
locus_tag	`-`
NCBI Name	`LOC130990123`
原始查询	`LOC130990123`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	target of rapamycin complex subunit LST8-1
产物	target of rapamycin complex subunit LST8-1
Arabidopsis	`AT3G18140` (LST8-1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821339] identity=87; qcov=0.975; evalue=0; confidence=high
Rice	`Os03g0681700` (OsWD40-81) - identity=85.6; qcov=0.99; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0031929 (TOR signaling); GO:0031931 (TORC1 complex); GO:0031932 (TORC2 complex); GO:0032956 (regulation of actin cytoskeleton organization)
KEGG	smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF23098 (Beta-prop_NOL10_N); PF23381 (Beta-prop_IFT122_1st)
InterPro	-
eggNOG	-
NR	GeneID:130990123

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057770309.1`
2	Nucleoplasm	核质	0.60000	`XP_057770309.1`
3	Cytosol	细胞质基质	0.60000	`XP_057770309.1`
4	Midbody	Midbody	0.60000	`XP_057770309.1`
5	Nucleus	细胞核	0.40000	`XP_057770309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15152350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr6:15152823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A7,B107,C43,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770309.1

315 aa

158

315

WD40

Beta-prop_IFT122_1st

Beta-prop_NOL10_N

WD40

PF00400 WD40 26-63 aa PF23381 Beta-prop_IFT122_1st 39-310 aa PF23098 Beta-prop_NOL10_N 59-184 aa PF00400 WD40 70-107 aa PF00400 WD40 115-148 aa PF00400 WD40 203-244 aa PF00400 WD40 250-286 aa

XP_057770310.1

315 aa

158

315

WD40

Beta-prop_IFT122_1st

Beta-prop_NOL10_N

WD40

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770309.1`	Pfam	`PF00400`	WD40	Repeat	26	63	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770309.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	39	310	2.8e-43	149.0	IFT122 first beta-propeller
`XP_057770309.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	59	184	1.7e-12	47.9	Nucleolar protein 10-like, N-terminal domain
`XP_057770309.1`	Pfam	`PF00400`	WD40	Repeat	70	107	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770309.1`	Pfam	`PF00400`	WD40	Repeat	115	148	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770309.1`	Pfam	`PF00400`	WD40	Repeat	203	244	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770309.1`	Pfam	`PF00400`	WD40	Repeat	250	286	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770310.1`	Pfam	`PF00400`	WD40	Repeat	26	63	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770310.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	39	310	2.8e-43	149.0	IFT122 first beta-propeller
`XP_057770310.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	59	184	1.7e-12	47.9	Nucleolar protein 10-like, N-terminal domain
`XP_057770310.1`	Pfam	`PF00400`	WD40	Repeat	70	107	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770310.1`	Pfam	`PF00400`	WD40	Repeat	115	148	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770310.1`	Pfam	`PF00400`	WD40	Repeat	203	244	1.9e-50	167.9	WD domain, G-beta repeat
`XP_057770310.1`	Pfam	`PF00400`	WD40	Repeat	250	286	1.9e-50	167.9	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914326.1
GAATTAGCATATTTGAAAGTGTAGTGGGGCGAAATTAGAATTTGAGGTAAATTTTGATTCCACTCTAAATCAGTCTTACCAATTTTTCACTCTTCTGCGATTACTAGAGACGCCGGAGGGCAGCGGAAAATCTCTATGATATTGAACCTCAAAAAGAAAAGGAAAAATGCAAAAACCGACGCCCCCGTATTGCTCAACTCTTGATATTATTCAAGAATAAAGATTTATGATGGTTTGAGTTTTCCTGCTTCAACTAATTC...

XM_057914327.1
GAATTAGCATATTTGAAAGTGTAGTGGGGCGAAATTAGAATTTGAGGTAAATTTTGATTCCACTCTAAATCAGTCTTACCAATTTTTCACTCTTCTGCGATTACTAGAGACGCCGGAGGGCAGCGGAAAATCTCTATGATATTGAACCTCAAAAAGAAAAGGAAAAATGCAAAAACCGACGCCCCCGTATTGCTCAACTCTTGATATTATTCAAGAATAAAGATTTATGATGGTTTGAGTTTTCCTGCTTCAACTAATTC...

CDS

2 records

下载 CDS FASTA

LOC130990123
ATGAGTCAACAGCCATCAGTTGTTTTGGCTACTGCAAGCTATGATCACACCATCCGTTTCTGGGAAGCGAAAAGTGGGCGCTGCTATCGAACAATCCAGTACCCAGAATCTCAAGTGAACAGGCTTGAGATTACTCCAGATAAGCGCTACCTGGCTGCAGCTGGGAATCCGCATATTCGACTGTTTGATGTCAATTCAAACAGCCCTCAGCCCGTGATGAGCTATGACTCACACACTAATAATGTAATGGCTGTTGGATT...

Protein

2 records

下载 Protein FASTA

XP_057770309.1
MSQQPSVVLATASYDHTIRFWEAKSGRCYRTIQYPESQVNRLEITPDKRYLAAAGNPHIRLFDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNRGTCYVWRLMRGTQTMTNFEPLHKLQAHDEYILKCLLSPELCEPNRYLATASSDNTVKIWNVDGFTLEKTLVGHQRW...

XP_057770310.1
MSQQPSVVLATASYDHTIRFWEAKSGRCYRTIQYPESQVNRLEITPDKRYLAAAGNPHIRLFDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNRGTCYVWRLMRGTQTMTNFEPLHKLQAHDEYILKCLLSPELCEPNRYLATASSDNTVKIWNVDGFTLEKTLVGHQRW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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