Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001445`

染色体: Chr06 坐标: 15269581-15271155 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001445`
名称	SmilChr06G001445
描述	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15269581 - 15271155 / `+`

ID 对照

NCBI Gene ID	`LOC130990134`
GeneID	`130990134`
locus_tag	`-`
NCBI Name	`LOC130990134`
原始查询	`LOC130990134`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
产物	alpha-1%2C6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Arabidopsis	`AT2G05320` (AT2G05320) beta-1,2-N-acetylglucosaminyltransferase II [Source:NCBI gene (formerly Entrezgene);Acc:815080] identity=64.7; qcov=0.993; evalue=0; confidence=high
Rice	`Os02g0798100` - identity=71.1; qcov=0.82; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0005795 (Golgi stack); GO:0006487 (protein N-linked glycosylation); GO:0008455 (alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity); GO:0009312 (oligosaccharide biosynthetic process)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05060 (MGAT2)
InterPro	-
eggNOG	-
NR	GeneID:130990134

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057770317.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057770317.1`
3	Nucleus	细胞核	0.00000	`XP_057770317.1`
4	Chromosome	染色体	0.00000	`XP_057770317.1`
5	Centromere	着丝粒	0.00000	`XP_057770317.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15269773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,D2
`Chr6:15270181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr6:15270308`	`CA`	`C`	1bp_deletion	frameshift_variant	158	A13,A14,A15,A16,A19,A21,A24,A25,A4,A7,A8,A9,B1,B101,B102,B105,B11,B110,B111,B112,B117,B118,B119,B120,B121,B125,B126,B127,B129,B130,B132,B133,B134,B136,B137,B139,B140,B17,B18,B2,B20,B23,B29,B3,B30,B32,B33,B34,B35,B36,B4,B40,B42,B43,B44,B45,B46,B47,B49,B50,B52,B53,B55,B58,B59,B6,B60,B61,B62,B63,B7,B70,B71,B72,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B86,B88,B89,B9,B91,B92,B96,B98,C1,C10,C11,C13,C14,C16,C19,C2,C20,C21,C22,C27,C29,C30,C31,C32,C33,C34,C38,C39,C4,C41,C42,C43,C44,C45,C47,C48,C49,C51,C52,C54,C56,C58,C59,C6,C60,C62,C63,C65,C67,C68,C69,C7,C72,C74,C75,C76,C77,C78,C8,C80,C81,C82,C85,C87,C9,D10,D2,D3,D4,D5,D6,D7,D8,D9
`Chr6:15270310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr6:15270316`	`G`	`GC`	1bp_insertion	frameshift_variant	143	A13,A14,A15,A16,A19,A21,A24,A25,A4,A7,A8,A9,B1,B101,B102,B110,B111,B112,B117,B118,B119,B121,B125,B126,B127,B129,B130,B132,B133,B136,B137,B139,B140,B17,B18,B2,B20,B29,B3,B30,B32,B33,B34,B35,B36,B4,B40,B42,B43,B44,B45,B47,B49,B50,B52,B53,B59,B6,B60,B62,B63,B7,B70,B71,B72,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B86,B88,B9,B90,B91,B96,B98,C1,C10,C11,C13,C14,C16,C19,C2,C20,C21,C22,C27,C29,C30,C31,C32,C33,C34,C38,C4,C41,C43,C44,C45,C47,C48,C52,C54,C58,C59,C6,C60,C62,C63,C65,C66,C67,C68,C69,C7,C71,C72,C75,C76,C77,C78,C8,C81,C82,C87,C9,D10,D2,D3,D4,D5,D6,D7,D8,D9
`Chr6:15270320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B9,C38
`Chr6:15270345`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	B88
`Chr6:15270345`	`ACT`	`A`	2bp_deletion	CDS_variant	1	B88
`Chr6:15270387`	`TAA`	`T`	2bp_deletion	frameshift_variant	107	A10,A13,A16,A19,A21,A25,A8,B101,B102,B104,B111,B118,B125,B126,B129,B130,B134,B139,B140,B17,B18,B2,B26,B29,B33,B34,B35,B36,B4,B42,B43,B49,B50,B52,B53,B55,B58,B59,B61,B63,B70,B71,B72,B74,B76,B77,B78,B79,B80,B89,B91,B92,B93,B96,B99,C1,C10,C16,C19,C2,C20,C22,C27,C29,C30,C32,C38,C4,C41,C43,C44,C45,C47,C48,C49,C52,C58,C60,C61,C62,C63,C65,C66,C67,C68,C7,C71,C72,C74,C75,C76,C77,C78,C80,C81,C82,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D9
`Chr6:15270392`	`C`	`CGA`	2bp_insertion	frameshift_variant	106	A10,A13,A16,A19,A21,A25,A8,B101,B102,B104,B111,B118,B125,B126,B129,B130,B134,B139,B140,B17,B18,B2,B26,B29,B33,B34,B35,B36,B4,B42,B43,B49,B50,B52,B53,B55,B58,B59,B61,B63,B70,B71,B72,B74,B76,B77,B78,B79,B80,B89,B91,B92,B93,B96,B99,C1,C10,C16,C19,C2,C20,C22,C27,C29,C30,C32,C38,C4,C41,C43,C44,C47,C48,C49,C52,C58,C60,C61,C62,C63,C65,C66,C67,C68,C7,C71,C72,C74,C75,C76,C77,C78,C80,C81,C82,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D9
`Chr6:15270441`	`C`	`CGG`	2bp_insertion	frameshift_variant	20	A18,A20,B101,B126,B140,B55,B66,B69,B70,B8,C18,C2,C38,C55,C76,C9,D1,D2,D7,D9
`Chr6:15270443`	`GAT`	`G`	2bp_deletion	frameshift_variant	68	A10,A11,A18,A20,A8,B101,B102,B104,B105,B106,B111,B126,B130,B14,B140,B21,B33,B34,B4,B43,B49,B5,B50,B52,B55,B58,B63,B66,B69,B70,B71,B73,B77,B78,B79,B8,B90,B91,B92,B99,C18,C2,C27,C29,C30,C32,C38,C52,C55,C58,C61,C62,C66,C68,C7,C74,C75,C76,C79,C82,C87,C9,D1,D2,D3,D4,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770317.1

434 aa

217

434

MGAT2

PF05060 MGAT2 89-419 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770317.1`	Pfam	`PF05060`	MGAT2	Family	89	419	3.4e-101	339.6	N-acetylglucosaminyltransferase II (MGAT2)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914334.1
ATTTCGGTAAAGATCTGAACTTTTTTTATGATTTTCTATGGCGGTTTCTTACAGAAAAGCCCGGATGAAAAATTTGGGTTTTTGCCGGTTGATTACGATTCTTGTTTTCGGAGCTATTTTCTTGTTGTTATTGTTGAGGGCCAATACGTTTACAGATTTAATCAGCAGATATTCAGTTGAGAGTGATGATGAGAGTTTTGGATCGAGTAATTATTATAACTATACTTTGAGTTCTAGTACGAATTTGAAACTTCCTCGGC...

CDS

1 records

下载 CDS FASTA

LOC130990134
ATGGCGGTTTCTTACAGAAAAGCCCGGATGAAAAATTTGGGTTTTTGCCGGTTGATTACGATTCTTGTTTTCGGAGCTATTTTCTTGTTGTTATTGTTGAGGGCCAATACGTTTACAGATTTAATCAGCAGATATTCAGTTGAGAGTGATGATGAGAGTTTTGGATCGAGTAATTATTATAACTATACTTTGAGTTCTAGTACGAATTTGAAACTTCCTCGGCAGAATGAGCTGTCGATTTCACTAGAGAAGCGTAATCA...

Protein

1 records

下载 Protein FASTA

XP_057770317.1
MAVSYRKARMKNLGFCRLITILVFGAIFLLLLLRANTFTDLISRYSVESDDESFGSSNYYNYTLSSSTNLKLPRQNELSISLEKRNQMLPRNLDLYPKLAKNHIVIVLYVHNRPQYLGVAVDSLSKVEGISETLLIVSHDGYFDEMNKVVEGIKFCQVKQIFAPFSPHVFPDGFPGVSSSDCKDKDDAVVKKCVGTPDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETRQHSGHILFIEEDHFIFPNAYRNLQLLVKLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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