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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001453

染色体: Chr06 坐标: 15372935-15376320 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001453
名称SmilChr06G001453
描述pentatricopeptide repeat-containing protein At1g51965, mitochondrial
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向15372935 - 15376320 / -

ID 对照

NCBI Gene IDLOC130990141
GeneID130990141
locus_tag-
NCBI NameLOC130990141
原始查询LOC130990141

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g51965, mitochondrial
产物pentatricopeptide repeat-containing protein At1g51965%2C mitochondrial
ArabidopsisAT1G51965 (ABO5)
ABA Overly-Sensitive 5 [Source:NCBI gene (formerly Entrezgene);Acc:841625]
identity=64.7; qcov=0.982; evalue=0; confidence=high
RiceOs02g0226900
-
identity=56; qcov=0.982; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130990141

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057770325.1
2 Chloroplast 叶绿体 0.20000 XP_057770325.1
3 Nucleus 细胞核 0.00000 XP_057770325.1
4 Chromosome 染色体 0.00000 XP_057770325.1
5 Centromere 着丝粒 0.00000 XP_057770325.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:15374040 G A EMS_canonical_SNV CDS_variant 1 C83
Chr6:15374041 C T EMS_canonical_SNV CDS_variant 2 C37,C71
Chr6:15374105 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:15374469 C T EMS_canonical_SNV CDS_variant 4 B128,C19,C61,C85
Chr6:15374731 C T EMS_canonical_SNV CDS_variant 2 C16,C52
Chr6:15374813 G A EMS_canonical_SNV CDS_variant 2 B2,B93
Chr6:15375611 G A EMS_canonical_SNV CDS_variant 4 B59,C61,C83,D2
Chr6:15375701 G A EMS_canonical_SNV CDS_variant 1 B44
Chr6:15375962 G A EMS_canonical_SNV CDS_variant 1 D11
Chr6:15376053 G A EMS_canonical_SNV CDS_variant 1 B108
Chr6:15376103 G A EMS_canonical_SNV CDS_variant 1 C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770325.1
650 aa
N
1
325
650
TPR_24
PPR
PPR_2
PPR_long
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF23276 TPR_24 187-294 aa PF01535 PPR 200-229 aa PF13041 PPR_2 200-246 aa PF17177 PPR_long 204-361 aa PF23276 TPR_24 220-329 aa PF13812 PPR_3 225-280 aa PF12854 PPR_1 228-261 aa PF13041 PPR_2 233-277 aa PF01535 PPR 237-265 aa PF12854 PPR_1 263-295 aa PF01535 PPR 270-300 aa PF13812 PPR_3 291-350 aa PF13041 PPR_2 302-349 aa PF01535 PPR 306-335 aa PF01535 PPR 408-437 aa PF23276 TPR_24 409-501 aa PF13812 PPR_3 432-487 aa PF13041 PPR_2 440-486 aa PF01535 PPR 442-471 aa PF17177 PPR_long 451-624 aa PF13812 PPR_3 463-524 aa PF12854 PPR_1 472-502 aa PF13041 PPR_2 475-521 aa PF01535 PPR 477-507 aa PF12854 PPR_1 506-537 aa PF23276 TPR_24 507-606 aa PF13041 PPR_2 509-557 aa PF01535 PPR 512-542 aa PF13812 PPR_3 534-590 aa PF12854 PPR_1 540-572 aa PF13041 PPR_2 544-591 aa PF01535 PPR 547-577 aa PF12854 PPR_1 576-606 aa PF13041 PPR_2 579-622 aa PF01535 PPR 582-612 aa
XP_057770326.1
650 aa
N
1
325
650
TPR_24
PPR
PPR_2
PPR_long
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF23276 TPR_24 187-294 aa PF01535 PPR 200-229 aa PF13041 PPR_2 200-246 aa PF17177 PPR_long 204-361 aa PF23276 TPR_24 220-329 aa PF13812 PPR_3 225-280 aa PF12854 PPR_1 228-261 aa PF13041 PPR_2 233-277 aa PF01535 PPR 237-265 aa PF12854 PPR_1 263-295 aa PF01535 PPR 270-300 aa PF13812 PPR_3 291-350 aa PF13041 PPR_2 302-349 aa PF01535 PPR 306-335 aa PF01535 PPR 408-437 aa PF23276 TPR_24 409-501 aa PF13812 PPR_3 432-487 aa PF13041 PPR_2 440-486 aa PF01535 PPR 442-471 aa PF17177 PPR_long 451-624 aa PF13812 PPR_3 463-524 aa PF12854 PPR_1 472-502 aa PF13041 PPR_2 475-521 aa PF01535 PPR 477-507 aa PF12854 PPR_1 506-537 aa PF23276 TPR_24 507-606 aa PF13041 PPR_2 509-557 aa PF01535 PPR 512-542 aa PF13812 PPR_3 534-590 aa PF12854 PPR_1 540-572 aa PF13041 PPR_2 544-591 aa PF01535 PPR 547-577 aa PF12854 PPR_1 576-606 aa PF13041 PPR_2 579-622 aa PF01535 PPR 582-612 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057770325.1 Pfam PF23276 TPR_24 Repeat 187 294 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770325.1 Pfam PF01535 PPR Repeat 200 229 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 200 246 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF17177 PPR_long Repeat 204 361 6.9e-35 121.1 Pentacotripeptide-repeat region of PRORP
XP_057770325.1 Pfam PF23276 TPR_24 Repeat 220 329 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770325.1 Pfam PF13812 PPR_3 Repeat 225 280 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 228 261 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 233 277 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 237 265 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 263 295 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF01535 PPR Repeat 270 300 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF13812 PPR_3 Repeat 291 350 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 302 349 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 306 335 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF01535 PPR Repeat 408 437 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF23276 TPR_24 Repeat 409 501 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770325.1 Pfam PF13812 PPR_3 Repeat 432 487 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 440 486 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 442 471 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF17177 PPR_long Repeat 451 624 6.9e-35 121.1 Pentacotripeptide-repeat region of PRORP
XP_057770325.1 Pfam PF13812 PPR_3 Repeat 463 524 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 472 502 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 475 521 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 477 507 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 506 537 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF23276 TPR_24 Repeat 507 606 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 509 557 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 512 542 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF13812 PPR_3 Repeat 534 590 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 540 572 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 544 591 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 547 577 5.7e-75 243.2 PPR repeat
XP_057770325.1 Pfam PF12854 PPR_1 Repeat 576 606 8.6e-76 250.1 PPR repeat
XP_057770325.1 Pfam PF13041 PPR_2 Repeat 579 622 2.7e-109 357.9 PPR repeat family
XP_057770325.1 Pfam PF01535 PPR Repeat 582 612 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF23276 TPR_24 Repeat 187 294 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770326.1 Pfam PF01535 PPR Repeat 200 229 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 200 246 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF17177 PPR_long Repeat 204 361 6.9e-35 121.1 Pentacotripeptide-repeat region of PRORP
XP_057770326.1 Pfam PF23276 TPR_24 Repeat 220 329 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770326.1 Pfam PF13812 PPR_3 Repeat 225 280 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 228 261 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 233 277 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 237 265 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 263 295 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF01535 PPR Repeat 270 300 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF13812 PPR_3 Repeat 291 350 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 302 349 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 306 335 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF01535 PPR Repeat 408 437 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF23276 TPR_24 Repeat 409 501 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770326.1 Pfam PF13812 PPR_3 Repeat 432 487 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 440 486 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 442 471 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF17177 PPR_long Repeat 451 624 6.9e-35 121.1 Pentacotripeptide-repeat region of PRORP
XP_057770326.1 Pfam PF13812 PPR_3 Repeat 463 524 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 472 502 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 475 521 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 477 507 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 506 537 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF23276 TPR_24 Repeat 507 606 2.7e-39 134.9 Pentatricopeptide repeat-containing protein
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 509 557 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 512 542 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF13812 PPR_3 Repeat 534 590 2.4e-56 188.4 Pentatricopeptide repeat domain
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 540 572 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 544 591 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 547 577 5.7e-75 243.2 PPR repeat
XP_057770326.1 Pfam PF12854 PPR_1 Repeat 576 606 8.6e-76 250.1 PPR repeat
XP_057770326.1 Pfam PF13041 PPR_2 Repeat 579 622 2.7e-109 357.9 PPR repeat family
XP_057770326.1 Pfam PF01535 PPR Repeat 582 612 5.7e-75 243.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057914343.1
TGGAGTCCCACCATGTCAGATAAGGAACCGGGTCCCAAGGGTGCCACCTAGATTCGAGAACCCCCCATAGTGGCTGCTCTAAGTGAACCTATCGACTGAAGCTCCCCACCATGCGCTGCCATCTCCGCCACCTCATCCCTTCCTCCCGCCGCGCATATGCCACCAAATACACCGGAAAAGTGGTGACATCCACCAACAAAGGCCGCATCTCCGCCATCGAAGTCGCTGTCACTCCTCCGACGCTCATCTCCGATGTCCGC...
XM_057914342.1
TGGAGTCCCACCATGTCAGATAAGGAACCGGGTCCCAAGGGTGCCACCTAGATTCGAGAACCCCCCATAGTGGCTGCTCTAAGTGAACCTATCGACTGAAGCTCCCCACCATGCGCTGCCATCTCCGCCACCTCATCCCTTCCTCCCGCCGCGCATATGCCACCAAATACACCGGAAAAGTGGTGACATCCACCAACAAAGGCCGCATCTCCGCCATCGAAGTCGCTGTCACTCCTCCGACGCTCATCTCCGATGTCCGC...

CDS

2 records

下载 CDS FASTA
LOC130990141
ATGCGCTGCCATCTCCGCCACCTCATCCCTTCCTCCCGCCGCGCATATGCCACCAAATACACCGGAAAAGTGGTGACATCCACCAACAAAGGCCGCATCTCCGCCATCGAAGTCGCTGTCACTCCTCCGACGCTCATCTCCGATGTCCGCGGCTACCCACTCCCCCGCCGCGAGCTCATCGTCGAAGCAACCAAACTCCTCCAATCAAAATCCGTCACGTCATCGTCCGATTCCTTCCTCGACCTCTCCGAATACCTCCA...
LOC130990141
ATGCGCTGCCATCTCCGCCACCTCATCCCTTCCTCCCGCCGCGCATATGCCACCAAATACACCGGAAAAGTGGTGACATCCACCAACAAAGGCCGCATCTCCGCCATCGAAGTCGCTGTCACTCCTCCGACGCTCATCTCCGATGTCCGCGGCTACCCACTCCCCCGCCGCGAGCTCATCGTCGAAGCAACCAAACTCCTCCAATCAAAATCCGTCACGTCATCGTCCGATTCCTTCCTCGACCTCTCCGAATACCTCCA...

Protein

2 records

下载 Protein FASTA
XP_057770325.1
MRCHLRHLIPSSRRAYATKYTGKVVTSTNKGRISAIEVAVTPPTLISDVRGYPLPRRELIVEATKLLQSKSVTSSSDSFLDLSEYLQALNVPPTTSEVSEILKALKSPTLALEFFHFCRSHIPNYQHNAFTYNRILLILSKSSLPDRIDKMKEIVDLMARLRTAGNISTINILIGAFNTVDGLEKCLELLKNWGLLLTCYTYKCLVQAYLRANDLNRALQVYAQIRRKGYNLDSFGYNMLLDALAKDGKVDEANKVFEDM...
XP_057770326.1
MRCHLRHLIPSSRRAYATKYTGKVVTSTNKGRISAIEVAVTPPTLISDVRGYPLPRRELIVEATKLLQSKSVTSSSDSFLDLSEYLQALNVPPTTSEVSEILKALKSPTLALEFFHFCRSHIPNYQHNAFTYNRILLILSKSSLPDRIDKMKEIVDLMARLRTAGNISTINILIGAFNTVDGLEKCLELLKNWGLLLTCYTYKCLVQAYLRANDLNRALQVYAQIRRKGYNLDSFGYNMLLDALAKDGKVDEANKVFEDM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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