当前解析结果
SmilChr06G001456| 统一新 Gene ID | SmilChr06G001456 |
|---|---|
| 名称 | SmilChr06G001456 |
| 描述 | pentatricopeptide repeat-containing protein At5g48910-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15402060 - 15404976 / - |
| NCBI Gene ID | LOC130990143 |
|---|---|
| GeneID | 130990143 |
| locus_tag | - |
| NCBI Name | LOC130990143 |
| 原始查询 | LOC130990143 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g48910-like |
| 产物 | pentatricopeptide repeat-containing protein At5g48910-like |
| Arabidopsis | AT5G48910 (LPA66)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834949] identity=39.4; qcov=1.09; evalue=4.72e-160; confidence=medium |
| Rice | Os01g0814300 (P0432B10.26)- identity=59.1; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990143 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057770330.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770330.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770330.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770330.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770330.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15402233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr6:15402778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B14,C75 |
Chr6:15404274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C30,C43 |
Chr6:15404468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B90,B92 |
Chr6:15404633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B30,B72 |
Chr6:15404647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr6:15404757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770330.1PF01535
PPR 128-155 aa
PF13812
PPR_3 153-200 aa
PF13041
PPR_2 153-201 aa
PF12854
PPR_1 154-182 aa
PF01535
PPR 156-186 aa
PF01535
PPR 229-252 aa
PF01535
PPR 258-284 aa
PF01535
PPR 328-352 aa
PF20431
E_motif 377-433 aa
PF20430
Eplus_motif 438-464 aa
PF14432
DYW_deaminase 469-561 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770330.1 |
Pfam | PF01535 |
PPR | Repeat | 128 | 155 | 2e-36 | 122.4 | PPR repeat |
XP_057770330.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 153 | 200 | 9.5e-14 | 51.9 | Pentatricopeptide repeat domain |
XP_057770330.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 153 | 201 | 9.2e-38 | 128.8 | PPR repeat family |
XP_057770330.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 154 | 182 | 1.4e-22 | 79.9 | PPR repeat |
XP_057770330.1 |
Pfam | PF01535 |
PPR | Repeat | 156 | 186 | 2e-36 | 122.4 | PPR repeat |
XP_057770330.1 |
Pfam | PF01535 |
PPR | Repeat | 229 | 252 | 2e-36 | 122.4 | PPR repeat |
XP_057770330.1 |
Pfam | PF01535 |
PPR | Repeat | 258 | 284 | 2e-36 | 122.4 | PPR repeat |
XP_057770330.1 |
Pfam | PF01535 |
PPR | Repeat | 328 | 352 | 2e-36 | 122.4 | PPR repeat |
XP_057770330.1 |
Pfam | PF20431 |
E_motif | Repeat | 377 | 433 | 1.6e-14 | 54.6 | E motif |
XP_057770330.1 |
Pfam | PF20430 |
Eplus_motif | Motif | 438 | 464 | 2e-06 | 28.1 | E+ motif |
XP_057770330.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 469 | 561 | 1.5e-37 | 128.0 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。