Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001463`

染色体: Chr06 坐标: 15495523-15498317 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001463`
名称	SmilChr06G001463
描述	transcription factor IIIA-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15495523 - 15498317 / `+`

ID 对照

NCBI Gene ID	`LOC130990148`
GeneID	`130990148`
locus_tag	`-`
NCBI Name	`LOC130990148`
原始查询	`LOC130990148`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor IIIA-like
产物	transcription factor IIIA-like
Arabidopsis	`AT1G72050` (TFIIIA) transcription factor IIIA [Source:NCBI gene (formerly Entrezgene);Acc:843536] identity=53.3; qcov=0.869; evalue=4.65e-113; confidence=high
Rice	`Os05g0121400` (OJ1001_G01.7) - identity=46.4; qcov=0.916; evalue=1.34e-92; confidence=high
GO	GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF13894 (zf-C2H2_4)
InterPro	-
eggNOG	-
NR	GeneID:130990148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770341.1`
2	Nucleoplasm	核质	1.00000	`XP_057770341.1`
3	Chromosome	染色体	0.00000	`XP_057770341.1`
4	Centromere	着丝粒	0.00000	`XP_057770341.1`
5	Chromatin	染色质	0.00000	`XP_057770341.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15496000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B40,C8
`Chr6:15496105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:15496606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,B80,B98
`Chr6:15496745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:15496769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B77,B95,C18,C63
`Chr6:15496787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B64,B90,B92
`Chr6:15496890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,C29,C32,C68
`Chr6:15497291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr6:15497364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:15497484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B78,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770341.1

425 aa

212

425

zf-C2H2

zf-C2H2_4

zf-C2H2

PF00096 zf-C2H2 67-88 aa PF13894 zf-C2H2_4 67-88 aa PF00096 zf-C2H2 94-118 aa PF00096 zf-C2H2 217-241 aa PF00096 zf-C2H2 308-332 aa

XP_057770342.1

421 aa

210

421

zf-C2H2

zf-C2H2_4

zf-C2H2

PF00096 zf-C2H2 63-84 aa PF13894 zf-C2H2_4 63-84 aa PF00096 zf-C2H2 90-114 aa PF00096 zf-C2H2 213-237 aa PF00096 zf-C2H2 304-328 aa

XP_057770343.1

367 aa

184

367

zf-C2H2

PF00096 zf-C2H2 36-60 aa PF00096 zf-C2H2 159-183 aa PF00096 zf-C2H2 250-274 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770341.1`	Pfam	`PF00096`	zf-C2H2	Domain	67	88	1.8e-23	82.3	Zinc finger, C2H2 type
`XP_057770341.1`	Pfam	`PF13894`	zf-C2H2_4	Domain	67	88	6.9e-12	45.7	C2H2-type zinc finger
`XP_057770341.1`	Pfam	`PF00096`	zf-C2H2	Domain	94	118	1.8e-23	82.3	Zinc finger, C2H2 type
`XP_057770341.1`	Pfam	`PF00096`	zf-C2H2	Domain	217	241	1.8e-23	82.3	Zinc finger, C2H2 type
`XP_057770341.1`	Pfam	`PF00096`	zf-C2H2	Domain	308	332	1.8e-23	82.3	Zinc finger, C2H2 type
`XP_057770342.1`	Pfam	`PF00096`	zf-C2H2	Domain	63	84	1.6e-23	82.5	Zinc finger, C2H2 type
`XP_057770342.1`	Pfam	`PF13894`	zf-C2H2_4	Domain	63	84	6.1e-12	45.9	C2H2-type zinc finger
`XP_057770342.1`	Pfam	`PF00096`	zf-C2H2	Domain	90	114	1.6e-23	82.5	Zinc finger, C2H2 type
`XP_057770342.1`	Pfam	`PF00096`	zf-C2H2	Domain	213	237	1.6e-23	82.5	Zinc finger, C2H2 type
`XP_057770342.1`	Pfam	`PF00096`	zf-C2H2	Domain	304	328	1.6e-23	82.5	Zinc finger, C2H2 type
`XP_057770343.1`	Pfam	`PF00096`	zf-C2H2	Domain	36	60	6.2e-17	61.7	Zinc finger, C2H2 type
`XP_057770343.1`	Pfam	`PF00096`	zf-C2H2	Domain	159	183	6.2e-17	61.7	Zinc finger, C2H2 type
`XP_057770343.1`	Pfam	`PF00096`	zf-C2H2	Domain	250	274	6.2e-17	61.7	Zinc finger, C2H2 type

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914358.1
GATTTTACTAAATGACACAAATACCCGCGCTGTATACATAACGCAACCCCTAATCCCTTCAGCTCGTCACTTCCTCTCACTCTTAGCGCCGTTCGCATTTAGGGTTTCTGCGTCTCCCTCCAATTTCAACATCTATATTCTGTATACGCCTACAGTGTGCGTATACAACCGTACATGCATACAGAAATGGTGGGCAAAGGAGAGAAATCACGAGATCCGATTTTCAGAGACATCCGGCGATATTATTGCGAGTTCTGCGG...

XM_057914359.1
TGTATACATAACGCAACCCCTAATCCCTTCAGCTCGTCACTTCCTCTCACTCTTAGCGCCGTTCGCATTTAGGGTTTCTGCGTCTCCCTCCAATTTCAACATCTATATTCTGTATACGCCTACAGTGTGCGTATACAACCGTACATGCATACAGAAATGGTGGGCAAAGGAGAGAAATCACGAGATCCGATTTTCAGAGACATCCGGCGATATTATTGCGAGTTCTGCGGGATTTGCCGATCGAAAAAAGCCCTAATCGC...

CDS

3 records

下载 CDS FASTA

LOC130990148
ATGCATACAGAAATGGTGGGCAAAGGAGAGAAATCACGAGATCCGATTTTCAGAGACATCCGGCGATATTATTGCGAGTTCTGCGGGATTTGCCGATCGAAAAAAGCCCTAATCGCCGCTCATATCCAAGCTAACCACGCGGAGGAATTGCAGGAAAAGGAGCTGAATGAAGAAAAGGAACACGGAGAGAAATTGAATAAGTGTGAAGAATGCGGCGCTAGTTTCTCGAAGCCTGCTCATCTTAAGCAGCATATGCAAAG...

LOC130990148
ATGCATACAGAAATGGTGGGCAAAGGAGAGAAATCACGAGATCCGATTTTCAGAGACATCCGGCGATATTATTGCGAGTTCTGCGGGATTTGCCGATCGAAAAAAGCCCTAATCGCCGCTCATATCCAAGCTAACCACGCGGAAAAGGAGCTGAATGAAGAAAAGGAACACGGAGAGAAATTGAATAAGTGTGAAGAATGCGGCGCTAGTTTCTCGAAGCCTGCTCATCTTAAGCAGCATATGCAAAGCCATTCGCTCGA...

Protein

3 records

下载 Protein FASTA

XP_057770341.1
MHTEMVGKGEKSRDPIFRDIRRYYCEFCGICRSKKALIAAHIQANHAEELQEKELNEEKEHGEKLNKCEECGASFSKPAHLKQHMQSHSLERPFICSVDDCESSYRRKDHLNRHMLQHQGKLFECPVEGCKTMFTLQGNMTRHVKDFHCESAPTDIEHPKESNCGKLHKHEDSQEKLLECPVKDCKRTFKLQGYMAWHVKEYHGESAFTDVKHATEHVCAETHCGKVFRYPSKLYKHEDSHVKLDSLEAYCAEPGCMKYF...

XP_057770342.1
MHTEMVGKGEKSRDPIFRDIRRYYCEFCGICRSKKALIAAHIQANHAEKELNEEKEHGEKLNKCEECGASFSKPAHLKQHMQSHSLERPFICSVDDCESSYRRKDHLNRHMLQHQGKLFECPVEGCKTMFTLQGNMTRHVKDFHCESAPTDIEHPKESNCGKLHKHEDSQEKLLECPVKDCKRTFKLQGYMAWHVKEYHGESAFTDVKHATEHVCAETHCGKVFRYPSKLYKHEDSHVKLDSLEAYCAEPGCMKYFSNER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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