Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001485`

染色体: Chr06 坐标: 15818411-15824554 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001485`
名称	SmilChr06G001485
描述	nuclear pore complex protein NUP93A-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15818411 - 15824554 / `-`

ID 对照

NCBI Gene ID	`LOC130990170`
GeneID	`130990170`
locus_tag	`-`
NCBI Name	`LOC130990170`
原始查询	`LOC130990170`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear pore complex protein NUP93A-like
产物	nuclear pore complex protein NUP93A-like
Arabidopsis	`AT2G41620` (AT2G41620) Nucleoporin interacting component (Nup93/Nic96-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818760] identity=70.7; qcov=1; evalue=0; confidence=high
Rice	`Os03g0349000` - identity=65.8; qcov=1; evalue=0; confidence=high
GO	GO:0005643 (nuclear pore); GO:0006606 (protein import into nucleus); GO:0016973 (poly(A)+ mRNA export from nucleus); GO:0017056 (structural constituent of nuclear pore)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF04097 (Nic96)
InterPro	-
eggNOG	-
NR	GeneID:130990170

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770368.1`
2	Nuclear pore complex	核孔复合体	1.00000	`XP_057770368.1`
3	Nucleus membrane	核膜	1.00000	`XP_057770368.1`
4	Chromosome	染色体	0.40000	`XP_057770368.1`
5	Nucleoplasm	核质	0.20000	`XP_057770369.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15818669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15818795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr6:15818948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:15819433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,C13,C86
`Chr6:15819465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B64,B90,B92,C23
`Chr6:15819838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:15819998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:15820000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:15820155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,B82
`Chr6:15820215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:15820293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:15820318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770368.1

864 aa

432

864

Nic96

PF04097 Nic96 251-858 aa

XP_057770369.1

754 aa

377

754

Nic96

PF04097 Nic96 141-748 aa

XP_057770370.1

754 aa

377

754

Nic96

PF04097 Nic96 141-748 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770368.1`	Pfam	`PF04097`	Nic96	Repeat	251	858	2.1e-96	324.4	Nup93/Nic96
`XP_057770369.1`	Pfam	`PF04097`	Nic96	Repeat	141	748	1.7e-96	324.7	Nup93/Nic96
`XP_057770370.1`	Pfam	`PF04097`	Nic96	Repeat	141	748	1.7e-96	324.7	Nup93/Nic96

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914385.1
AGTGAGTACTGAGTCCCCACTTTACTCGAGTAGGTGAGATCAAGTACCCCACTGTGGGTGCTCTTATAGAATTTGTATTAGCTTGAAGTGGATTTGTATCTGGTTTTGTTCGCTTTTAGTTTAGTAGCGGTTATTGTTATGTGTTTAGTTAAGAGATTGCTATTTTTATGTTATTGAGATTTTGTTCTTCTCTTTATTGTGGATGTAGTAGTAGAACCAGATGAATTTGGGGTGGAGGTGGTCTTTGTAGCCGTAGAGGG...

XM_057914386.1
AAACAGAGGAATTTGGATCAGTTGGAGGCTCTGTCGAAGAAGCTGAAGGCGAAAACCCTACGAGCCGAAGCTCCTTCTCAGTCTATTGCAGCTACTAGAAATTCTTTCCGTTGGTAGGCTATTAGCCCGGGAGGGGTTAAATGCAGAGCAGCTAGCTCGTGATCTCAAGTCCTTTGAATTGAAGACCACATTTGAAGATGTATTTCCTGCTGAGGCAACAACAGTCGAAGAGTATCTCCAACAGGTCCATGAAATGGCAA...

CDS

3 records

下载 CDS FASTA

LOC130990170
ATGGCGAGCGACGCCGACATGAGTGGTTGGACCGGTCTTCTGCATTCCTCTTCGAAGCTAATCGAACAAGCCGCTCCTTCGGCTCAGTTTCCGCCGCTTCAGAGGAATTTGGATCAGTTGGAGGCTCTGTCGAAGAAGCTGAAGGCGAAAACCCTACGAGCCGAAGCTCCTTCTCAGTCTATTGCAGCTACTAGGCTATTAGCCCGGGAGGGGTTAAATGCAGAGCAGCTAGCTCGTGATCTCAAGTCCTTTGAATTGAA...

LOC130990170
ATGGCAATGCTCTCCGCTGTTCAGGAAGCTCAGAAGGATAATCTTAGAAGTTTCAATGATTATATGATGTCTGTATTGCAGGAGGACTGGCGAAAGGAAAAAAGAGATTTCCTTCAGAGCCTAAGTCGTATTTCAATACTACCTAGAACAAATATCCGTGATTCGAGCAGTGGGATTAGTCGCCAGGGTCAAATAGTACCTATGGCTTCAAGTCCTGAGCTTTCATCGGGACAATCTGGTGCTGAGCTGGCACTATTGGC...

Protein

3 records

下载 Protein FASTA

XP_057770368.1
MASDADMSGWTGLLHSSSKLIEQAAPSAQFPPLQRNLDQLEALSKKLKAKTLRAEAPSQSIAATRLLAREGLNAEQLARDLKSFELKTTFEDVFPAEATTVEEYLQQVHEMAMLSAVQEAQKDNLRSFNDYMMSVLQEDWRKEKRDFLQSLSRISILPRTNIRDSSSGISRQGQIVPMASSPELSSGQSGAELALLADKPVVEKKAAAYAEVVKNLNSARQHGLPFKPAAAFKNAYESLKMDSSGSKSVSMLKIWHLIMT...

XP_057770369.1
MAMLSAVQEAQKDNLRSFNDYMMSVLQEDWRKEKRDFLQSLSRISILPRTNIRDSSSGISRQGQIVPMASSPELSSGQSGAELALLADKPVVEKKAAAYAEVVKNLNSARQHGLPFKPAAAFKNAYESLKMDSSGSKSVSMLKIWHLIMTLMGEDPSVKRGVSKRMSLVIGARHHLEWGHEKYVMDMIHSHPAQAALGGAVGNLQRIRAFLRMRLREYGVLDFDAGDARRQPPIDTTWQQIYFCLRTGYYDDALGVARTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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