当前解析结果
SmilChr06G001487| 统一新 Gene ID | SmilChr06G001487 |
|---|---|
| 名称 | SmilChr06G001487 |
| 描述 | chromatin-remodeling ATPase INO80 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15837745 - 15848932 / - |
| NCBI Gene ID | LOC130990171 |
|---|---|
| GeneID | 130990171 |
| locus_tag | - |
| NCBI Name | LOC130990171 |
| 原始查询 | LOC130990171 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chromatin-remodeling ATPase INO80 |
| 产物 | chromatin-remodeling ATPase INO80 |
| Arabidopsis | AT3G57300 (INO80)DNA helicase INO80-like protein [Source:NCBI gene (formerly Entrezgene);Acc:824897] identity=67.6; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0352500 (OsINO80)- identity=57.8; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0005524 (ATP binding); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity); GO:0031011 (Ino80 complex); GO:0042393 (histone binding); GO:0043618 (GO:0043618); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF13892 (DBINO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990171 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770371.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057770371.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770371.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770371.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770371.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15838923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B13,B21,B44,B75 |
Chr6:15840403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C56 |
Chr6:15840580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,C30,C43 |
Chr6:15840597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:15840709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B47 |
Chr6:15841100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B2,B93,C85 |
Chr6:15841193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B62,C87,D6 |
Chr6:15843096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B2,B93,C85 |
Chr6:15843150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:15845329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr6:15845538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B54,B71,C29,C52,C54 |
Chr6:15845566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B77,C2,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770371.1PF13892
DBINO 339-468 aa
PF04851
ResIII 576-743 aa
PF00176
SNF2-rel_dom 580-878 aa
PF00271
Helicase_C 1202-1312 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770371.1 |
Pfam | PF13892 |
DBINO | Domain | 339 | 468 | 2.6e-45 | 154.8 | DNA-binding domain |
XP_057770371.1 |
Pfam | PF04851 |
ResIII | Family | 576 | 743 | 3.3e-09 | 37.6 | Type III restriction enzyme, res subunit |
XP_057770371.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 580 | 878 | 3.5e-86 | 289.6 | SNF2-related domain |
XP_057770371.1 |
Pfam | PF00271 |
Helicase_C | Domain | 1202 | 1312 | 8.8e-24 | 84.6 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。