Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001499`

染色体: Chr06 坐标: 16050764-16054876 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001499`
名称	SmilChr06G001499
描述	protein IQ-DOMAIN 12-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16050764 - 16054876 / `-`

ID 对照

NCBI Gene ID	`LOC130990180`
GeneID	`130990180`
locus_tag	`-`
NCBI Name	`LOC130990180`
原始查询	`LOC130990180`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 12-like
产物	protein IQ-DOMAIN 12-like
Arabidopsis	`AT4G14750` (IQD19) IQ-domain 19 [Source:NCBI gene (formerly Entrezgene);Acc:827130] identity=32.5; qcov=0.721; evalue=2.3e-15; confidence=low
Rice	`Os03g0355700` - identity=69.2; qcov=0.147; evalue=4.6e-10; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:130990180

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057770384.1`
2	Cell membrane	细胞膜	1.00000	`XP_057770384.1`
3	Nucleus	细胞核	0.60000	`XP_057770383.1`
4	Nucleus membrane	核膜	0.20000	`XP_057770383.1`
5	Chromosome	染色体	0.00000	`XP_057770383.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16050904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B99,C30,C44,C75
`Chr6:16050909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:16050995`	`G`	`GTA`	2bp_insertion	frameshift_variant	1	B117
`Chr6:16050995`	`G`	`GTA`	2bp_insertion	CDS_variant	1	B117
`Chr6:16051058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:16051092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B139,B25,B82,C14,C49
`Chr6:16051220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,A18,B120
`Chr6:16054141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,B90,B92
`Chr6:16054315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr6:16054384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770383.1

273 aa

136

273

DUF4005

PF00612 IQ 102-118 aa PF00612 IQ 123-141 aa PF13178 DUF4005 197-241 aa

XP_057770384.1

265 aa

132

265

DUF4005

PF00612 IQ 94-110 aa PF00612 IQ 115-133 aa PF13178 DUF4005 189-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770383.1`	Pfam	`PF00612`	IQ	Motif	102	118	1.3e-11	43.9	IQ calmodulin-binding motif
`XP_057770383.1`	Pfam	`PF00612`	IQ	Motif	123	141	1.3e-11	43.9	IQ calmodulin-binding motif
`XP_057770383.1`	Pfam	`PF13178`	DUF4005	Family	197	241	3.9e-05	24.9	Protein of unknown function (DUF4005)
`XP_057770384.1`	Pfam	`PF00612`	IQ	Motif	94	110	1.2e-11	44.1	IQ calmodulin-binding motif
`XP_057770384.1`	Pfam	`PF00612`	IQ	Motif	115	133	1.2e-11	44.1	IQ calmodulin-binding motif
`XP_057770384.1`	Pfam	`PF13178`	DUF4005	Family	189	233	6.4e-06	27.4	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914401.1
TTCTTGTTAAAAGATTAATAGTTCAGAATATAAACCATAATTTTTTTTCTATAAATATGGACGAGTCTTTTTGTGCTAACTAAAAATCACAGTTCAATCAATTGATGAAATAGATGAGTAGTAGCCTTTTGCCTAATTTGAACCTCTCTCTTTCTCTCCTAATCCTCTTCTTTAGCAGGTGCACAGCTTTGAAATGGGGAAGAAGAAAAGCTGGTTCACTTATGTGAAAAGACTCTTCATTTCTGAATCAAAACCAAAAT...

XM_057914400.1
AAGATTAATAGTTCAGAATATAAACCATAATTTTTTTTCTATAAATATGGACGAGTCTTTTTGTGCTAACTAAAAATCACAGTTCAATCAATTGATGAAATAGATGAGTAGTAGCCTTTTGCCTAATTTGAACCTCTCTCTTTCTCTCCTAATCCTCTTCTTTAGCAGGTGCACAGCTTTGAAATGGGGAAGAAGAAAAGCTGGTTCACTTATGTGAAAAGACTCTTCATTTCTGAATCAAAACCAAAATCAAAAAAGAA...

CDS

2 records

下载 CDS FASTA

LOC130990180
ATGGGGAAGAAGAAAAGCTGGTTCACTTATGTGAAAAGACTCTTCATTTCTGAATCAAAACCAAAATCAAAAAAGGCGATCAAATTCAAATCCTATCCTGCAATTGAAGCGACGGAGAGAACAACACTGATCGACGCTGCAGCTGCGGGGGAGCAACAAAAACGCGCAATCGCCGTCGCGGCTGCTGCAGCGGCGGCGGCGGAGGCTGCAATTGCTGCTGCAGCCGCCGCGGCCGAGGTGGCACGGCTCGCCAATTTCTC...

LOC130990180
ATGGGGAAGAAGAAAAGCTGGTTCACTTATGTGAAAAGACTCTTCATTTCTGAATCAAAACCAAAATCAAAAAAGAATTCGAGATCACTATTATTGAAGGCGATCAAATTCAAATCCTATCCTGCAATTGAAGCGACGGAGAGAACAACACTGATCGACGCTGCAGCTGCGGGGGAGCAACAAAAACGCGCAATCGCCGTCGCGGCTGCTGCAGCGGCGGCGGCGGAGGCTGCAATTGCTGCTGCAGCCGCCGCGGCCGA...

Protein

2 records

下载 Protein FASTA

XP_057770383.1
MGKKKSWFTYVKRLFISESKPKSKKNSRSLLLKAIKFKSYPAIEATERTTLIDAAAAGEQQKRAIAVAAAAAAAAEAAIAAAAAAAEVARLANFSRRKNCMAATKIQSCYRGYLARKALSALKGVVRLQAVVRGELARRNLHLQKSIIVPNSKATTLGTTKLAQLKLRSAIKQAKKEAFTQGRRSFSHAKQQYSTRDDATFSHNAHSFRAYMATTESAKAKARSLSTPKQRRPRFSESYSYQDHSPSKLSISSWTSFSSE...

XP_057770384.1
MGKKKSWFTYVKRLFISESKPKSKKAIKFKSYPAIEATERTTLIDAAAAGEQQKRAIAVAAAAAAAAEAAIAAAAAAAEVARLANFSRRKNCMAATKIQSCYRGYLARKALSALKGVVRLQAVVRGELARRNLHLQKSIIVPNSKATTLGTTKLAQLKLRSAIKQAKKEAFTQGRRSFSHAKQQYSTRDDATFSHNAHSFRAYMATTESAKAKARSLSTPKQRRPRFSESYSYQDHSPSKLSISSWTSFSSEQIPNQHCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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