Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001509`

染色体: Chr06 坐标: 16113990-16117789 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001509`
名称	SmilChr06G001509
描述	triacylglycerol lipase SDP1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16113990 - 16117789 / `+`

ID 对照

NCBI Gene ID	`LOC130990189`
GeneID	`130990189`
locus_tag	`-`
NCBI Name	`LOC130990189`
原始查询	`LOC130990189`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	triacylglycerol lipase SDP1-like
产物	triacylglycerol lipase SDP1-like
Arabidopsis	`AT5G04040` (SDP1) Patatin-like phospholipase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830283] identity=67.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0762000` (OspPLAIValpha) - identity=64.9; qcov=1.02; evalue=0; confidence=high
GO	GO:0004806 (triacylglycerol lipase activity); GO:0006629 (lipid metabolic process)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00590 (Arachidonic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01734 (Patatin); PF11815 (DUF3336)
InterPro	-
eggNOG	-
NR	GeneID:130990189

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057770398.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057770398.1`
3	Mitochondrion membrane	线粒体膜	0.40000	`XP_057770398.1`
4	Mitochondrion	线粒体	0.20000	`XP_057770398.1`
5	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057770398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16114999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:16115008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,B90,B92
`Chr6:16115303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,C27,D11,D4
`Chr6:16115427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B53,D2
`Chr6:16115604`	`AG`	`A`	1bp_deletion	frameshift_variant	1	A23
`Chr6:16115604`	`AG`	`A`	1bp_deletion	CDS_variant	1	A23
`Chr6:16115798`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A8
`Chr6:16115798`	`AC`	`A`	1bp_deletion	CDS_variant	1	A8
`Chr6:16115801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:16115833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B50,B80,B90,B92
`Chr6:16115912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B126,B134,C41
`Chr6:16116428`	`G`	`GA`	1bp_insertion	frameshift_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770398.1

785 aa

392

785

DUF3336

Patatin

PF11815 DUF3336 92-222 aa PF01734 Patatin 229-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770398.1`	Pfam	`PF11815`	DUF3336	Family	92	222	1.4e-28	100.1	Domain of unknown function (DUF3336)
`XP_057770398.1`	Pfam	`PF01734`	Patatin	Domain	229	424	2e-21	77.8	Patatin-like phospholipase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914415.1
AAAACACGTAATGTAGAGATTCTCGAATTAAGTTTTATAGTATATAGTAATATGTTTTAGTTTCTGTAAGTAAAGCCCAAAATGAATCATAGAAGACGCTGAACCGGAACAGGGAATTATAGAAGCCCTTGTCTCACAAAAACACACACTTATGTTTGCACAAACATTTCTCGGAAAGTCTTGAAAGTTTCTAGGTGTTTGACTTGGGGAATTTGGACATTGCACAAGGAATTTACTATTAATCCTTAAAACCCTCATAA...

CDS

1 records

下载 CDS FASTA

LOC130990189
ATGGACATAACGAACGAGGCGAGCGTGGATGAGTTCTCGATTGGGCCGTCGACGTTGTTGGGGCGGACAATCGCGTTCCGGATCCTCTTGTGCAAATCCCTCTCACATCTCCGCCACAAAATCCTACTCACCCTTTGTCTCCGCTTCTCTAAACTCACCAAAACCTTAAAGTCCCAGCTCTCATGGATGCACCCGCAGGGGATCCTACTGATGCTCACCGCAATCGCATTCCTCCTGAAGCGCTTCACAAACGTGAGGGC...

Protein

1 records

下载 Protein FASTA

XP_057770398.1
MDITNEASVDEFSIGPSTLLGRTIAFRILLCKSLSHLRHKILLTLCLRFSKLTKTLKSQLSWMHPQGILLMLTAIAFLLKRFTNVRATAEMAYKRKFWSNVTRSALTYDEWAHAAKMLDRETPRAGDAALYDEELVRNKLHELRRRRHDRSIRDIMFYMRADLVRNLGNMCNPELHKGRLQVPRLIKEYINEVTTQLRMVCDSEAEDLSLEEKLAFMHETRHAFGRSALLLSGGASLGAFHVGVVKTLVEQKLLPRIIAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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