Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001522`

染色体: Chr06 坐标: 16400266-16403195 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001522`
名称	SmilChr06G001522
描述	amino acid transporter AVT1A-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16400266 - 16403195 / `+`

ID 对照

NCBI Gene ID	`LOC130990202`
GeneID	`130990202`
locus_tag	`-`
NCBI Name	`LOC130990202`
原始查询	`LOC130990202`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amino acid transporter AVT1A-like
产物	amino acid transporter AVT1A-like
Arabidopsis	`AT2G41190` (AT2G41190) Transmembrane amino acid transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:818718] identity=57.9; qcov=0.924; evalue=0; confidence=high
Rice	`Os02g0101000` (OsATL11) - identity=42.4; qcov=0.992; evalue=4.01e-137; confidence=medium
GO	GO:0005886 (plasma membrane)
KEGG	smil04082 (Neuroactive ligand signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF01490 (Aa_trans)
InterPro	-
eggNOG	-
NR	GeneID:130990202

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	1.00000	`XP_057770409.1`
2	Vacuole	液泡	0.80000	`XP_057770409.1`
3	Nucleus	细胞核	0.00000	`XP_057770409.1`
4	Chromosome	染色体	0.00000	`XP_057770409.1`
5	Centromere	着丝粒	0.00000	`XP_057770409.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16400676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B45,C27,C85,D10
`Chr6:16400848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C38
`Chr6:16401001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B21
`Chr6:16401211`	`CG`	`C`	1bp_deletion	frameshift_variant	1	D10
`Chr6:16401211`	`CG`	`C`	1bp_deletion	CDS_variant	1	D10
`Chr6:16401255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C50
`Chr6:16401362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:16401497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr6:16401940`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A19
`Chr6:16401940`	`TC`	`T`	1bp_deletion	CDS_variant	1	A19
`Chr6:16401943`	`AT`	`A`	1bp_deletion	frameshift_variant	1	A19
`Chr6:16401943`	`AT`	`A`	1bp_deletion	CDS_variant	1	A19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770409.1

516 aa

258

516

Aa_trans

PF01490 Aa_trans 126-509 aa

XP_057770410.1

516 aa

258

516

Aa_trans

PF01490 Aa_trans 126-509 aa

XP_057770411.1

516 aa

258

516

Aa_trans

PF01490 Aa_trans 126-509 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770409.1`	Pfam	`PF01490`	Aa_trans	Domain	126	509	4.1e-59	201.0	Transmembrane amino acid transporter protein
`XP_057770410.1`	Pfam	`PF01490`	Aa_trans	Domain	126	509	4.1e-59	201.0	Transmembrane amino acid transporter protein
`XP_057770411.1`	Pfam	`PF01490`	Aa_trans	Domain	126	509	1.4e-60	205.8	Transmembrane amino acid transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914427.1
GTGTACATGCATAATGCATTCCAAATTTGTTTATTCTATTAGATTAGATAGGATTTTGTAAGCCTTACCCATAATTTGAAATTTATAGTTAATAATCCTACTAATTAAATTGCATATTCCAAAAGTTTGCGTATACATCTACTTCGACAAGGCCTCCTTCTTCCAATTCCAAACAAAGCATTCCCCAGTTTCGAGGAGTTTGCTTCTGCAACAACTAGTTCGATGGCGAGTAGAGAGTCGTCGGAGTATCTCTTGGAGGA...

XM_057914426.1
TTCCAAAAGTTTGCGTATACATCTACTTCGACAAGGCCTCCTTCTTCCAATTCCAAACAAAGCATTCCCCAGTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGCAGTCGTCGTTATCTTCATTGAAACTCCTTCAGTTCTGAGCTGAGCCGCCAACAACTGATATCCATTACGTGCATATAGGTTTCGAGGAGTTTGCTTCTGCAACAACTAGTTCGATGGCGAGTAGAGAGTCGTCGGAGTATCTCTTGGAG...

CDS

3 records

下载 CDS FASTA

LOC130990202
ATGGCGAGTAGAGAGTCGTCGGAGTATCTCTTGGAGGATTGTGAATACGACGTCGCCTCAGACGCCGCCTGCAGCAGCATCGAAGACGACGACGATGATCATCGCGTGTCCCTCTCCTCCTCTGCCGTCTCGCAGCAGTGGCCTCAGAGCTTCAGAGAAGCAGTTGATATATATTCCATATCTGCATCACCAAGCTTCGGACTACTTCGCCCTCGGACATCAGCACCAGGAATCAGCAGCACCCAAAACTTGTTGGAATC...

Protein

3 records

下载 Protein FASTA

XP_057770409.1
MASRESSEYLLEDCEYDVASDAACSSIEDDDDDHRVSLSSSAVSQQWPQSFREAVDIYSISASPSFGLLRPRTSAPGISSTQNLLESNGKIPFVADYKKVDELPRSRAHSILSDKQATAEAPPSHGCSLLQTIFNGMNVMAGVGLLSTPYTVKVAGWASLAVLLLFAFICCYTAILMKHCFESAQGILTFPDMGEAAFGKWGRVFISIILYSELYMSCTDYLILEGDNLSTIFSGVSLNIFGFKIDTMHLFATVAVLVVF...

XP_057770410.1
MASRESSEYLLEDCEYDVASDAACSSIEDDDDDHRVSLSSSAVSQQWPQSFREAVDIYSISASPSFGLLRPRTSAPGISSTQNLLESNGKIPFVADYKKVDELPRSRAHSILSDKQATAEAPPSHGCSLLQTIFNGMNVMAGVGLLSTPYTVKVAGWASLAVLLLFAFICCYTAILMKHCFESAQGILTFPDMGEAAFGKWGRVFISIILYSELYMSCTDYLILEGDNLSTIFSGVSLNIFGFKIDTMHLFATVAVLVVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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