当前解析结果
SmilChr06G001533| 统一新 Gene ID | SmilChr06G001533 |
|---|---|
| 名称 | SmilChr06G001533 |
| 描述 | pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 16554786 - 16557822 / - |
| NCBI Gene ID | LOC130990210 |
|---|---|
| GeneID | 130990210 |
| locus_tag | - |
| NCBI Name | LOC130990210 |
| 原始查询 | LOC130990210 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g15480%2C mitochondrial-like |
| Arabidopsis | AT1G15480 (AT1G15480)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838118] identity=45.7; qcov=0.913; evalue=2e-151; confidence=high |
| Rice | Os12g0170100- identity=38.5; qcov=1.03; evalue=1.02e-138; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3); PF17177 (PPR_long) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990210 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057770418.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770418.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770418.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770418.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770418.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:16555014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B112,B42,B43 |
Chr6:16555321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,C34,C75 |
Chr6:16555686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:16555714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:16556002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C85 |
Chr6:16556858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C40 |
Chr6:16556940 |
AT |
A |
1bp_deletion | frameshift_variant | 81 | A10,A11,A13,A21,A22,A24,A25,A5,A8,A9,B105,B106,B108,B109,B110,B111,B115,B117,B120,B121,B122,B123,B128,B129,B133,B134,B137,B138,B18,B20,B21,B22,B24,B28,B31,B36,B49,B5,B54,B59,B6,B76,B81,B85,B86,B88,B93,B98,B99,C17,C26,C28,C33,C36,C43,C45,C46,C5,C50,C51,C53,C54,C57,C60,C62,C67,C69,C70,C76,C77,C78,C79,C8,C81,C84,C86,D11,D2,D4,D6,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770418.1PF01535
PPR 219-245 aa
PF13812
PPR_3 253-296 aa
PF17177
PPR_long 271-376 aa
PF01535
PPR 287-316 aa
PF01535
PPR 425-451 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770418.1 |
Pfam | PF01535 |
PPR | Repeat | 219 | 245 | 4.3e-23 | 80.6 | PPR repeat |
XP_057770418.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 253 | 296 | 7.9e-17 | 61.8 | Pentatricopeptide repeat domain |
XP_057770418.1 |
Pfam | PF17177 |
PPR_long | Repeat | 271 | 376 | 8.8e-13 | 48.8 | Pentacotripeptide-repeat region of PRORP |
XP_057770418.1 |
Pfam | PF01535 |
PPR | Repeat | 287 | 316 | 4.3e-23 | 80.6 | PPR repeat |
XP_057770418.1 |
Pfam | PF01535 |
PPR | Repeat | 425 | 451 | 4.3e-23 | 80.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。