Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001535`

染色体: Chr06 坐标: 16581289-16586814 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001535`
名称	SmilChr06G001535
描述	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16581289 - 16586814 / `+`

ID 对照

NCBI Gene ID	`LOC130990215`
GeneID	`130990215`
locus_tag	`-`
NCBI Name	`LOC130990215`
原始查询	`LOC130990215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like
产物	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like
Arabidopsis	`AT1G12000` (AT1G12000) Phosphofructokinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837752] identity=79.5; qcov=0.959; evalue=0; confidence=high
Rice	`Os06g0247500` (OsPFPB) - identity=78.4; qcov=0.982; evalue=0; confidence=high
GO	GO:0003872 (6-phosphofructokinase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006096 (glycolytic process); GO:0009749 (response to glucose); GO:0015979 (photosynthesis); GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00365 (PFK)
InterPro	-
eggNOG	-
NR	GeneID:130990215

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770426.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770426.1`
3	Nucleus	细胞核	0.00000	`XP_057770426.1`
4	Chromosome	染色体	0.00000	`XP_057770426.1`
5	Centromere	着丝粒	0.00000	`XP_057770426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16581471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:16581502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:16581574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:16583007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:16584485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:16584502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:16585180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:16585219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:16585255`	`AC`	`A`	1bp_deletion	frameshift_variant	2	C7,D8
`Chr6:16585255`	`AC`	`A`	1bp_deletion	CDS_variant	2	C7,D8
`Chr6:16585281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B31,C79
`Chr6:16585437`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B106,B139,B15,B47,B82,C13,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770426.1

560 aa

280

560

PFK

PF00365 PFK 90-455 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770426.1`	Pfam	`PF00365`	PFK	Domain	90	455	8.7e-37	127.7	Phosphofructokinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914443.1
ATATAAGAGTATATTTCCAGTCCACCACCTCAGCCGCTTCTCCTCTCGTAGCGCATAAGACATTCCGCCACTCTCTCTCTCTCCTCTCTCTCTTTCTCTCTCACAGTGTGTGTGAAGTACCGAGCGCGTTGCCGATAAAATGGTTGTGAACGGATACGCGAACGGAGCGGCGGTGGCTCCGCCGCGATTCGCCACGGGTTGCAGTGAAGTGCAGGCCAGCCGCCTCCGGCTGTCACTTCCTCTGCCGGAAGTTCTCAAAA...

CDS

1 records

下载 CDS FASTA

LOC130990215
ATGGTTGTGAACGGATACGCGAACGGAGCGGCGGTGGCTCCGCCGCGATTCGCCACGGGTTGCAGTGAAGTGCAGGCCAGCCGCCTCCGGCTGTCACTTCCTCTGCCGGAAGTTCTCAAAAACTCTTTCCAAGTCGTCGACGGTCCGCCCAGCTCATCCGCTGGAAATCCAGATGAGATTGCAAAGCTTTTCCCAAACCTCTTCGGACAACCATCGGCAATGCTCGTGCGTAGTAGCACGTCGGCAGCTGCTTCCGATCA...

Protein

1 records

下载 Protein FASTA

XP_057770426.1
MVVNGYANGAAVAPPRFATGCSEVQASRLRLSLPLPEVLKNSFQVVDGPPSSSAGNPDEIAKLFPNLFGQPSAMLVRSSTSAAASDQSLKIGVVLSGGQAPGGHNVICGLFDYLEERTEGSALYGFRGGPAGIMNCKYVFLTSDFVRPYRNQGGFDMICSGRDKIETPEQFKKAEDTVNKLDLDGLVVIGGDDSNTNACLLAENFREKKIKTRVIGCPKTIDGDLKCKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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