Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001552

染色体: Chr06 坐标: 16899247-16901780 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001552
名称SmilChr06G001552
描述G2/mitotic-specific cyclin S13-7-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向16899247 - 16901780 / +

ID 对照

NCBI Gene IDLOC130990228
GeneID130990228
locus_tag-
NCBI NameLOC130990228
原始查询LOC130990228

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述G2/mitotic-specific cyclin S13-7-like
产物G2/mitotic-specific cyclin S13-7-like
ArabidopsisAT5G06150 (CYC1BAT)
Cyclin family protein [Source:NCBI gene (formerly Entrezgene);Acc:830502]
identity=55.2; qcov=0.97; evalue=9.83e-155; confidence=high
RiceOs01g0805600 (CycB1)
-
identity=47.1; qcov=0.991; evalue=7.28e-118; confidence=high
GOGO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG-
PfamPF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro-
eggNOG-
NRGeneID:130990228

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057770441.1
2 Chromosome 染色体 0.20000 XP_057770441.1
3 Centromere 着丝粒 0.00000 XP_057770441.1
4 Chromatin 染色质 0.00000 XP_057770441.1
5 Telomere 端粒 0.00000 XP_057770441.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:16899769 C T EMS_canonical_SNV CDS_variant 1 C42
Chr6:16899796 C T EMS_canonical_SNV CDS_variant 1 C14
Chr6:16899801 C T EMS_canonical_SNV CDS_variant 1 C43
Chr6:16900254 G A EMS_canonical_SNV CDS_variant 1 C42
Chr6:16900448 G A EMS_canonical_SNV CDS_variant 1 B77
Chr6:16900467 C T EMS_canonical_SNV stop_gained 11 A10,B14,B36,B68,B95,C17,C2,C30,C50,C84,D2
Chr6:16901148 C T EMS_canonical_SNV CDS_variant 1 B103
Chr6:16901153 G A EMS_canonical_SNV CDS_variant 1 C42
Chr6:16901166 G A EMS_canonical_SNV CDS_variant 1 C87
Chr6:16901295 C T EMS_canonical_SNV CDS_variant 5 B14,B53,B95,C34,C75
Chr6:16901302 G A EMS_canonical_SNV CDS_variant 1 C14
Chr6:16901352 G A EMS_canonical_SNV CDS_variant 1 C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057770441.1
437 aa
N
1
218
437
Cyclin_N
Cyclin_C
C
PF00134 Cyclin_N 187-312 aa PF02984 Cyclin_C 314-431 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057770441.1 Pfam PF00134 Cyclin_N Domain 187 312 4.5e-47 159.6 Cyclin, N-terminal domain
XP_057770441.1 Pfam PF02984 Cyclin_C Domain 314 431 2.1e-35 122.0 Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057914458.1
CCCCATTTGCTCTGTTCCTCTCTTCTCTATTTTCCCTTGCTTTCCTATAGAGAGAGAGAGTGAAAGAAGAAGGCAAGTTGCAGAAGACGACGGTTTTAGATTTTTTTTTACCAAGATTTTGATCATGGCTTCAAAGCAAGTGGTTGAACAACGTAACGCTGAAGAGGCGGTGGCCGCAGCGGCGAATAAACAGAACAGAGTGGCAGCGGAGAGGAAGAGCCGCCGGGTACTAGGCGACATTGGGAATCTCATCCCTGCTA...

CDS

1 records

下载 CDS FASTA
LOC130990228
ATGGCTTCAAAGCAAGTGGTTGAACAACGTAACGCTGAAGAGGCGGTGGCCGCAGCGGCGAATAAACAGAACAGAGTGGCAGCGGAGAGGAAGAGCCGCCGGGTACTAGGCGACATTGGGAATCTCATCCCTGCTAATGGGGTTGTTGAAGGCAAGCAGATTCCTCGGATTTCTCGACCTATTACGAGGAGTCTTGGTGCTCGATTACTCGCTAATGCACAGGCTGCACAAGCTCAAACCAACATGAATTCATTGGAGGC...

Protein

1 records

下载 Protein FASTA
XP_057770441.1
MASKQVVEQRNAEEAVAAAANKQNRVAAERKSRRVLGDIGNLIPANGVVEGKQIPRISRPITRSLGARLLANAQAAQAQTNMNSLEANANEAYANAAVPQKRVVARRPAQKRVVSTKLKPEEIIEISPDSNEVTVKEKKLLSKETESKKKLPTLTSALTARSKAATIVDIDAQDLGNDLAVVEYVEEIYNFYKSVENEGRAHDYMDSQPELNERMRAILIDWLIQVHYKFELSLETLYLTINIIDRFLASKTISRRELQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器