Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001556`

染色体: Chr06 坐标: 16962683-16965977 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001556`
名称	SmilChr06G001556
描述	uncharacterized SmilChr06G001556
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16962683 - 16965977 / `-`

ID 对照

NCBI Gene ID	`LOC130990231`
GeneID	`130990231`
locus_tag	`-`
NCBI Name	`LOC130990231`
原始查询	`LOC130990231`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835]; symbol=AT3G56680; hit=AT3G56680; species=arabidopsis; confidence=high
产物	Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835]; symbol=AT3G56680; hit=AT3G56680; species=arabidopsis; confidence=high
Arabidopsis	`AT3G56680` (AT3G56680) Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835] identity=54.9; qcov=1.01; evalue=7.13e-120; confidence=high
Rice	`Os05g0411600` - identity=47.5; qcov=0.967; evalue=7.12e-87; confidence=high
GO	GO:0003676 (nucleic acid binding)
KEGG	-
Pfam	PF01424 (R3H); PF12752 (SUZ)
InterPro	-
eggNOG	-
NR	GeneID:130990231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770443.1`
2	Nucleus	细胞核	0.80000	`XP_057770443.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057770445.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057770445.1`
5	P-body	P-body	0.40000	`XP_057770445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16963390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr6:16963433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B90,B92
`Chr6:16964282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,C64,C66
`Chr6:16965485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:16965529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770443.1

368 aa

184

368

R3H

SUZ

PF01424 R3H 53-101 aa PF12752 SUZ 142-189 aa

XP_057770444.1

368 aa

184

368

R3H

SUZ

PF01424 R3H 53-101 aa PF12752 SUZ 142-189 aa

XP_057770445.1

333 aa

166

333

R3H

SUZ

PF01424 R3H 18-66 aa PF12752 SUZ 107-154 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770443.1`	Pfam	`PF01424`	R3H	Domain	53	101	1e-09	38.9	R3H domain
`XP_057770443.1`	Pfam	`PF12752`	SUZ	Domain	142	189	6.4e-12	46.7	SUZ domain
`XP_057770444.1`	Pfam	`PF01424`	R3H	Domain	53	101	1e-09	38.9	R3H domain
`XP_057770444.1`	Pfam	`PF12752`	SUZ	Domain	142	189	6.4e-12	46.7	SUZ domain
`XP_057770445.1`	Pfam	`PF01424`	R3H	Domain	18	66	9.6e-10	39.1	R3H domain
`XP_057770445.1`	Pfam	`PF12752`	SUZ	Domain	107	154	6.3e-12	46.8	SUZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914460.1
ACGCGCTATGAAGCTCTGACCAACTTAGGAATTCGCATGGTTGCATACAGCCCAAAACTTTTGTACCAATTCTTGATTTGTATATAACCTAAATAAGCAATTATTACTCAATACAAAAACCAAACCCCAAAACACGCAGCTGCAAAAATTCCATATAAATCCGCCCCATTATTCTCCTCTTCCACTCTCTTCGATTGGTGGGAGGGAAATTACCCAAAGGGAAAATTCGAGAAAAGGGTTTCCCTTTTCTCAATTTTTTC...

XM_057914462.1
AAAAACCAAACCCCAAAACACGCAGCTGCAAAAATTCCATATAAATCCGCCCCATTATTCTCCTCTTCCACTCTCTTCGATTGGTGGGAGGGAAATTACCCAAAGGGAAAATTCGAGAAAAGGGTTTCCCTTTTCTCAATTTTTTCTTCCTCCTCTCTTTCTCTCTCTCCCCTCGCTGCGCGCCGGAGGAGTCATCCGGAAGGCTGTTGATGAGCACCAGCAGCCGCCGCCGCCCTACGTTTCGATGGTGGATCCGTTCC...

CDS

3 records

下载 CDS FASTA

LOC130990231
ATGGATTTGACTTCGCAATCGGCGGCTGAATCTGACGGCAACGGCGTCGTGTTGCAGCGGAAGGCTGTTGATGAGCACCAGCAGCCGCCGCCGCCCTACGTTTCGATGGTGGATCCGTTCCTCGTGGAGGCTCTTCAGAACCCTCGTCATCGTCTAACTATTCTACGAATGGAGCTTGATATACAGAAGTTCCTGCATAATTCAGACATACAGCAGTTTGAGTTTCCGCACTTCCCAACTTCATACCTTCGTCTTGCTGC...

Protein

3 records

下载 Protein FASTA

XP_057770443.1
MDLTSQSAAESDGNGVVLQRKAVDEHQQPPPPYVSMVDPFLVEALQNPRHRLTILRMELDIQKFLHNSDIQQFEFPHFPTSYLRLAAHRVAQHYGLQTMVLDNSVDGQGIRILVIKKAESKFPVVCLSDVPAKKSENDKLDQLKIVIRPRPKGSSNNSNELGLRRSPVRSVEERKEEYDRARARIFSSPSSSESEDTSFQVCSDGRNLMVNENEVSRNLAIDVDKNSYFREVGNSSRVAILRDREKDRSDPDYDRSYDRY...

XP_057770444.1
MDLTSQSAAESDGNGVVLQRKAVDEHQQPPPPYVSMVDPFLVEALQNPRHRLTILRMELDIQKFLHNSDIQQFEFPHFPTSYLRLAAHRVAQHYGLQTMVLDNSVDGQGIRILVIKKAESKFPVVCLSDVPAKKSENDKLDQLKIVIRPRPKGSSNNSNELGLRRSPVRSVEERKEEYDRARARIFSSPSSSESEDTSFQVCSDGRNLMVNENEVSRNLAIDVDKNSYFREVGNSSRVAILRDREKDRSDPDYDRSYDRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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