当前解析结果
SmilChr06G001564| 统一新 Gene ID | SmilChr06G001564 |
|---|---|
| 名称 | SmilChr06G001564 |
| 描述 | WAT1-related protein At5g07050-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 17089428 - 17091676 / + |
| NCBI Gene ID | LOC130990240 |
|---|---|
| GeneID | 130990240 |
| locus_tag | - |
| NCBI Name | LOC130990240 |
| 原始查询 | LOC130990240 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At5g07050-like |
| 产物 | WAT1-related protein At5g07050-like |
| Arabidopsis | AT5G07050 (UMAMIT9)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:830596] identity=63.8; qcov=1.01; evalue=2.72e-176; confidence=high |
| Rice | Os05g0409500 (OsUMAMIT9)- identity=67.9; qcov=0.961; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990240 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770452.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057770452.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057770452.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770452.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770452.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:17089995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr6:17089997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C14 |
Chr6:17090025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,B28,B34,C61 |
Chr6:17090796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:17090975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:17091017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:17091065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:17091087 |
T |
TA |
1bp_insertion | frameshift_variant | 19 | A13,A16,A5,A8,B110,B19,B25,B50,B60,B62,B68,B88,B98,C31,C35,C4,C57,C6,D9 |
Chr6:17091091 |
TC |
T |
1bp_deletion | frameshift_variant | 19 | A13,A16,A5,A8,B110,B19,B25,B50,B60,B62,B68,B88,B98,C31,C35,C4,C57,C6,D9 |
Chr6:17091264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr6:17091341 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | B16,B75,C11,C2,C32,C35,C64,C66,C68,C69,C81,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770452.1PF00892
EamA 19-159 aa
PF00892
EamA 195-333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770452.1 |
Pfam | PF00892 |
EamA | Domain | 19 | 159 | 1.1e-26 | 94.5 | EamA-like transporter family |
XP_057770452.1 |
Pfam | PF00892 |
EamA | Domain | 195 | 333 | 1.1e-26 | 94.5 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。