当前解析结果
SmilChr06G001568| 统一新 Gene ID | SmilChr06G001568 |
|---|---|
| 名称 | SmilChr06G001568 |
| 描述 | 3'-5' exonuclease-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 17131412 - 17132647 / - |
| NCBI Gene ID | LOC130990243 |
|---|---|
| GeneID | 130990243 |
| locus_tag | - |
| NCBI Name | LOC130990243 |
| 原始查询 | LOC130990243 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3'-5' exonuclease-like |
| 产物 | 3'-5' exonuclease-like |
| Arabidopsis | AT3G12460 (AT3G12460)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820425] identity=33.6; qcov=0.764; evalue=4.05e-28; confidence=low |
| Rice | Os01g0660800- identity=46.7; qcov=0.694; evalue=7.43e-55; confidence=high |
| GO | GO:0003676 (nucleic acid binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006139 (nucleobase-containing compound metabolic process); GO:0008408 (3'-5' exonuclease activity) |
| KEGG | - |
| Pfam | PF01612 (DNA_pol_A_exo1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990243 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770456.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057770456.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057770456.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770456.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770456.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:17131643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:17131880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,C38 |
Chr6:17132014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr6:17132081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr6:17132134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr6:17132192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,C18,C63 |
Chr6:17132261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B120 |
Chr6:17132345 |
G |
GA |
1bp_insertion | frameshift_variant | 181 | A1,A10,A11,A14,A15,A18,A2,A20,A21,A23,A24,A25,A3,A4,A7,A8,B1,B10,B100,B102,B103,B104,B106,B107,B108,B11,B112,B113,B117,B118,B119,B12,B122,B123,B125,B126,B128,B129,B13,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B17,B19,B2,B20,B22,B23,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B44,B45,B46,B47,B48,B51,B52,B53,B55,B57,B58,B63,B64,B65,B66,B7,B72,B73,B74,B76,B77,B78,B79,B8,B81,B82,B83,B84,B9,B90,B91,B92,B94,B95,B97,B98,B99,C1,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C44,C47,C49,C5,C51,C52,C53,C55,C56,C57,C58,C6,C61,C62,C63,C64,C65,C66,C7,C70,C71,C72,C74,C75,C76,C77,C79,C8,C80,C82,C84,C85,C87,D10,D11,D3,D4,D5,D6,D7,D9 |
Chr6:17132354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr6:17132362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,C46,C83 |
Chr6:17132377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C14 |
Chr6:17132426 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770456.1PF01612
DNA_pol_A_exo1 94-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770456.1 |
Pfam | PF01612 |
DNA_pol_A_exo1 | Domain | 94 | 261 | 4.8e-15 | 56.5 | 3'-5' exonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。