当前解析结果
SmilChr06G001585| 统一新 Gene ID | SmilChr06G001585 |
|---|---|
| 名称 | SmilChr06G001585 |
| 描述 | probable disease resistance RPP8-like protein 4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 17294550 - 17300163 / + |
| NCBI Gene ID | LOC130990258 |
|---|---|
| GeneID | 130990258 |
| locus_tag | - |
| NCBI Name | LOC130990258 |
| 原始查询 | LOC130990258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance RPP8-like protein 4 |
| 产物 | probable disease resistance RPP8-like protein 4 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.7; qcov=1.03; evalue=4.08e-98; confidence=low |
| Rice | Os07g0186500- identity=27.6; qcov=1.02; evalue=3.4e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990258 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770475.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770475.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770475.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770475.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:17295075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,C18,C63 |
Chr6:17295098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr6:17295114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr6:17295257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,C18,C37,C62,C8 |
Chr6:17297607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B68,B69,B91 |
Chr6:17297614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B68,B69,B91 |
Chr6:17297720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:17297736 |
G |
GT |
1bp_insertion | frameshift_variant | 7 | A8,B139,B27,B30,B57,B82,C35 |
Chr6:17297799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B68,B69,B91,C86 |
Chr6:17297810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C84 |
Chr6:17297847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C42 |
Chr6:17298062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B68,B69,B91,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770475.1PF18052
Rx_N 5-90 aa
PF00931
NB-ARC 157-327 aa
PF23559
WHD_DRP 418-487 aa
PF23598
LRR_14 543-850 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770475.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 90 | 5.1e-20 | 72.1 | Rx N-terminal domain |
XP_057770475.1 |
Pfam | PF00931 |
NB-ARC | Domain | 157 | 327 | 1.1e-43 | 149.6 | NB-ARC domain |
XP_057770475.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 418 | 487 | 1.7e-19 | 70.3 | Disease resistance protein Winged helix domain |
XP_057770475.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 543 | 850 | 2.3e-17 | 63.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。