Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001645`

染色体: Chr06 坐标: 18614780-18616761 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001645`
名称	SmilChr06G001645
描述	guanine nucleotide-binding protein subunit beta-like protein
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	18614780 - 18616761 / `+`

ID 对照

NCBI Gene ID	`LOC130990305`
GeneID	`130990305`
locus_tag	`-`
NCBI Name	`LOC130990305`
原始查询	`LOC130990305`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	guanine nucleotide-binding protein subunit beta-like protein
产物	guanine nucleotide-binding protein subunit beta-like protein
Arabidopsis	`AT1G18080` (ATARCA) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838388] identity=82.3; qcov=1; evalue=0; confidence=high
Rice	`Os01g0686800` (RACK1) - identity=72.1; qcov=1.04; evalue=6.42e-175; confidence=high
GO	GO:0001934 (positive regulation of protein phosphorylation); GO:0005080 (protein kinase C binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0043022 (ribosome binding); GO:0045182 (translation regulator activity); GO:0072344 (rescue of stalled cytosolic ribosome)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF08662 (eIF2A); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:130990305

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770509.1`
2	Cytosol	细胞质基质	0.60000	`XP_057770509.1`
3	Nucleus	细胞核	0.40000	`XP_057770509.1`
4	Chromosome	染色体	0.00000	`XP_057770509.1`
5	Centromere	着丝粒	0.00000	`XP_057770509.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:18615031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:18615088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:18615406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,D4
`Chr6:18615442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B134
`Chr6:18615593`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	B60
`Chr6:18615593`	`TGC`	`T`	2bp_deletion	CDS_variant	1	B60
`Chr6:18615688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C49
`Chr6:18615691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr6:18615742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,B47,C46,C75,C8
`Chr6:18615835`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B35,B80,B84
`Chr6:18615840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770509.1

327 aa

164

327

WD40

Beta-prop_NOL10_N

WD40

eIF2A

WD40

PF00400 WD40 9-43 aa PF00400 WD40 57-91 aa PF23098 Beta-prop_NOL10_N 67-235 aa PF00400 WD40 98-133 aa PF00400 WD40 138-179 aa PF08662 eIF2A 152-261 aa PF00400 WD40 184-221 aa PF00400 WD40 226-261 aa PF00400 WD40 298-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	9	43	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	57	91	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	67	235	1.5e-10	41.5	Nucleolar protein 10-like, N-terminal domain
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	98	133	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	138	179	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF08662`	eIF2A	Repeat	152	261	3.3e-06	27.9	Eukaryotic translation initiation factor eIF2A
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	184	221	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	226	261	4.8e-60	198.2	WD domain, G-beta repeat
`XP_057770509.1`	Pfam	`PF00400`	WD40	Repeat	298	322	4.8e-60	198.2	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914526.1
TTTTCTACTGAACTGGACTTTCGCCCAATTGGGCCACTCATAATCTGAGTCACCCCTCCAAAACCCTAAATCTCCAGTCCCTATATAAATTCCCCTCTTCAACAGCTAGGGCTTCCCATTTCCGCCTCTCTCCCCCGCAAAGCTCAAACCCTCCCCAATCCCGCCGCCGCCGCCGCCGCAAATAATCCACCAATGGCGCAGGAGCTGATCCTCCGCGGCACCATGCGTGCGCACACCGACTGGGTGACGGCCATCGCCAC...

CDS

1 records

下载 CDS FASTA

LOC130990305
ATGGCGCAGGAGCTGATCCTCCGCGGCACCATGCGTGCGCACACCGACTGGGTGACGGCCATCGCCACCCCTATCGACAACTCCGACATGATCGTCACCGCCTCTCGCGACAAGTCCATCATCGTGTGGGCTCTGACCAAGGAGGACCGCACCTACGGCGTCGCCCGCCGCCGCCTCACCGGCCACTCTCACTTCGTCCAGGACGTCGTCCTCTCTTCCGACGGCCAGTTCGCCCTCTCCGGCTCCTGGGACGGCGAGCT...

Protein

1 records

下载 Protein FASTA

XP_057770509.1
MAQELILRGTMRAHTDWVTAIATPIDNSDMIVTASRDKSIIVWALTKEDRTYGVARRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVSASRDKSIKLWNTLGECKYTIQDQDAHSDWVSCVRFSPNTMQPTIVSGSWDRTVKIWNLTNCKLRSTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATEASIKIW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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