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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001673

染色体: Chr06 坐标: 18991400-18998995 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001673
名称SmilChr06G001673
描述uncharacterized SmilChr06G001673
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向18991400 - 18998995 / +

ID 对照

NCBI Gene IDLOC130990332
GeneID130990332
locus_tag-
NCBI NameLOC130990332
原始查询LOC130990332

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843551]; symbol=AT1G72190; hit=AT1G72190; species=arabidopsis; confidence=high
产物D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843551]; symbol=AT1G72190; hit=AT1G72190; species=arabidopsis; confidence=high
ArabidopsisAT1G72190 (AT1G72190)
D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843551]
identity=67.5; qcov=0.976; evalue=1.72e-169; confidence=high
RiceOs07g0264100
-
identity=64.2; qcov=0.985; evalue=2.5e-157; confidence=high
GOGO:0004617 (phosphoglycerate dehydrogenase activity); GO:0051287 (NAD binding)
KEGG-
PfamPF00389 (2-Hacid_dh); PF02826 (2-Hacid_dh_C); PF07991 (KARI_N)
InterPro-
eggNOG-
NRGeneID:130990332

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057770524.1
2 Cytosol 细胞质基质 1.00000 XP_057770527.1
3 Mitochondrion matrix 线粒体基质 0.80000 XP_057770525.1
4 Cytoplasm 细胞质 0.60000 XP_057770527.1
5 Peroxisome 过氧化物酶体 0.40000 XP_057770525.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:18991772 G A EMS_canonical_SNV CDS_variant 1 C74
Chr6:18991783 G A EMS_canonical_SNV stop_gained 13 B104,B11,B124,B138,B15,B35,B74,C14,C2,C41,C48,C52,C68
Chr6:18991784 C T EMS_canonical_SNV stop_gained 1 C68
Chr6:18991784 C T EMS_canonical_SNV CDS_variant 1 C68
Chr6:18993270 G A EMS_canonical_SNV CDS_variant 1 C17
Chr6:18993339 CA C 1bp_deletion frameshift_variant 1 C20
Chr6:18993339 CA C 1bp_deletion CDS_variant 1 C20
Chr6:18993564 C T EMS_canonical_SNV CDS_variant 3 C32,C87,D11
Chr6:18994040 G A EMS_canonical_SNV CDS_variant 3 B1,D10,D11
Chr6:18994596 G A EMS_canonical_SNV CDS_variant 1 B107
Chr6:18994672 G A EMS_canonical_SNV CDS_variant 2 C34,C75
Chr6:18994699 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770524.1
368 aa
N
1
184
368
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 54-357 aa PF02826 2-Hacid_dh_C 150-334 aa PF07991 KARI_N 179-242 aa
XP_057770525.1
351 aa
N
1
176
351
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 37-341 aa PF02826 2-Hacid_dh_C 133-317 aa PF07991 KARI_N 162-225 aa
XP_057770526.1
351 aa
N
1
176
351
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 37-341 aa PF02826 2-Hacid_dh_C 133-317 aa PF07991 KARI_N 162-225 aa
XP_057770527.1
337 aa
N
1
168
337
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 23-327 aa PF02826 2-Hacid_dh_C 119-303 aa PF07991 KARI_N 148-211 aa
XP_057770529.1
337 aa
N
1
168
337
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 23-327 aa PF02826 2-Hacid_dh_C 119-303 aa PF07991 KARI_N 148-211 aa
XP_057770530.1
337 aa
N
1
168
337
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 23-327 aa PF02826 2-Hacid_dh_C 119-303 aa PF07991 KARI_N 148-211 aa
XP_057770531.1
337 aa
N
1
168
337
2-Hacid_dh
2-Hacid_dh_C
KARI_N
C
PF00389 2-Hacid_dh 23-327 aa PF02826 2-Hacid_dh_C 119-303 aa PF07991 KARI_N 148-211 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057770524.1 Pfam PF00389 2-Hacid_dh Domain 54 357 1.7e-15 57.6 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770524.1 Pfam PF02826 2-Hacid_dh_C Domain 150 334 2.1e-41 142.0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770524.1 Pfam PF07991 KARI_N Family 179 242 0.0002 21.7 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770525.1 Pfam PF00389 2-Hacid_dh Domain 37 341 1.4e-15 57.8 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770525.1 Pfam PF02826 2-Hacid_dh_C Domain 133 317 1.8e-41 142.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770525.1 Pfam PF07991 KARI_N Family 162 225 0.00018 21.8 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770526.1 Pfam PF00389 2-Hacid_dh Domain 37 341 1.4e-15 57.8 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770526.1 Pfam PF02826 2-Hacid_dh_C Domain 133 317 1.8e-41 142.1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770526.1 Pfam PF07991 KARI_N Family 162 225 0.00018 21.8 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770527.1 Pfam PF00389 2-Hacid_dh Domain 23 327 1.2e-15 58.0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770527.1 Pfam PF02826 2-Hacid_dh_C Domain 119 303 1.6e-41 142.3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770527.1 Pfam PF07991 KARI_N Family 148 211 0.00016 22.0 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770529.1 Pfam PF00389 2-Hacid_dh Domain 23 327 1.2e-15 58.0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770529.1 Pfam PF02826 2-Hacid_dh_C Domain 119 303 1.6e-41 142.3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770529.1 Pfam PF07991 KARI_N Family 148 211 0.00016 22.0 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770530.1 Pfam PF00389 2-Hacid_dh Domain 23 327 1.2e-15 58.0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770530.1 Pfam PF02826 2-Hacid_dh_C Domain 119 303 1.6e-41 142.3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770530.1 Pfam PF07991 KARI_N Family 148 211 0.00016 22.0 Acetohydroxy acid isomeroreductase, NADPH-binding domain
XP_057770531.1 Pfam PF00389 2-Hacid_dh Domain 23 327 1.2e-15 58.0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
XP_057770531.1 Pfam PF02826 2-Hacid_dh_C Domain 119 303 1.6e-41 142.3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XP_057770531.1 Pfam PF07991 KARI_N Family 148 211 0.00016 22.0 Acetohydroxy acid isomeroreductase, NADPH-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057914542.1
CGCCGTGCATCGCATGGACGGGCATACTAGTTGTTCTAAAGCCCTAATTCCACTGGATTTCTCATTTTCGTCCACTTTCAACTTTTCGCCCCATCCATCGCCCCACGCCACCCACCGGCATCCACTCCAGCCACCGTCGCCCCACGTCACCCACCGCCGTCCAGCCTCATCCTCCGTCGCCACGCTACCCACACGAAGAGATTGGCGTCCAGTGAGTGGCCGAATCTCTCGCCACCCACCGGAATCTATTCCCGCCGCCG...
XM_057914544.1
TCGCATGGACGGGCATACTAGTTGTTCTAAAGCCCTAATTCCACTGGATTTCTCATTTTCGTCCACTTTCAACTTTTCGCCCCATCCATCGCCCCACGCCACCCACCGGCATCCACTCCAGCCACCGTCGCCCCACGTCACCCACCGCCGTCCAGCCTCATCCTCCGTCGCCACGCTACCCACACGAAGAGATTGGCGTCCAGTGAGTGGCCGAATCTCTCGCCACCCACCGGAATCTATTCCCGCCGCCGATTCCTTCT...

CDS

7 records

下载 CDS FASTA
LOC130990332
ATGGTGCCAAGACAAAGCCGTTTCTATACCAGCCGAACAACAGTGGATGTTTGGCGATCTTACTGGTCCCGTTTATTGAGACAATCCCGGGGAATGAGTGGTGAGAGTAGCAAGCCGATTACTCATGTTCTTTTCTGTGGGCCTCATTTTCCTGCTTCCCATAACTATACAATGGAGTATCTGCGAAGCTATCCATTCATAAAGGTTGATGCCGTTCCCATTAAAGAGATCCCAGGTGTTATTGGGAATTATGATATTTG...
LOC130990332
ATGTTTGGCGATCTTACTGGTTTATTGAGACAATCCCGGGGAATGAGTGGTGAGAGTAGCAAGCCGATTACTCATGTTCTTTTCTGTGGGCCTCATTTTCCTGCTTCCCATAACTATACAATGGAGTATCTGCGAAGCTATCCATTCATAAAGGTTGATGCCGTTCCCATTAAAGAGATCCCAGGTGTTATTGGGAATTATGATATTTGTGTTGTAAAAAGTATGAGGCTAAACTTGGACATCATTGCTAGAGCAAACAA...

Protein

7 records

下载 Protein FASTA
XP_057770524.1
MVPRQSRFYTSRTTVDVWRSYWSRLLRQSRGMSGESSKPITHVLFCGPHFPASHNYTMEYLRSYPFIKVDAVPIKEIPGVIGNYDICVVKSMRLNLDIIARANKMKLIMQFGVGLEGVDIDAATKHGIKVARIPSDNTGNASSCAEMAIYLMLGLLRKQHEMQVSIKEKRLGDPAGDTLIGKTVFILGYGNIGIHLAKRLRPFGVKIIATKRSWKSLSEKSCNENGVHDEVVDEKGTHQDILKFASLADIVVCCLAMNKE...
XP_057770525.1
MFGDLTGLLRQSRGMSGESSKPITHVLFCGPHFPASHNYTMEYLRSYPFIKVDAVPIKEIPGVIGNYDICVVKSMRLNLDIIARANKMKLIMQFGVGLEGVDIDAATKHGIKVARIPSDNTGNASSCAEMAIYLMLGLLRKQHEMQVSIKEKRLGDPAGDTLIGKTVFILGYGNIGIHLAKRLRPFGVKIIATKRSWKSLSEKSCNENGVHDEVVDEKGTHQDILKFASLADIVVCCLAMNKETAGIVDDTFISSMRKGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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