当前解析结果
SmilChr06G001684| 统一新 Gene ID | SmilChr06G001684 |
|---|---|
| 名称 | SmilChr06G001684 |
| 描述 | DENN domain and WD repeat-containing protein SCD1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 19096089 - 19115468 / - |
| NCBI Gene ID | LOC130990342 |
|---|---|
| GeneID | 130990342 |
| locus_tag | - |
| NCBI Name | LOC130990342 |
| 原始查询 | LOC130990342 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DENN domain and WD repeat-containing protein SCD1 |
| 产物 | DENN domain and WD repeat-containing protein SCD1 |
| Arabidopsis | AT1G49040 (SCD1)stomatal cytokinesis defective / SCD1 protein (SCD1) [Source:NCBI gene (formerly Entrezgene);Acc:841327] identity=72.9; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0575500 (OsWD40-16)- identity=73; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0031410 (cytoplasmic vesicle); GO:0032483 (regulation of Rab protein signal transduction) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF02141 (DENN); PF03456 (uDENN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990342 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770546.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057770546.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057770546.1 |
| 4 | Endocytic vesicle | Endocytic vesicle | 0.60000 | XP_057770546.1 |
| 5 | Vesicle | 囊泡 | 0.60000 | XP_057770546.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:19096269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:19097044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B9,C38 |
Chr6:19099437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:19099702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr6:19100297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B26,C42 |
Chr6:19100460 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr6:19102951 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C10 |
Chr6:19102951 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr6:19104677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:19104717 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B119 |
Chr6:19104717 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B119 |
Chr6:19104741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770546.1PF03456
uDENN 35-103 aa
PF02141
DENN 123-305 aa
PF00400
WD40 851-899 aa
PF00400
WD40 907-941 aa
PF00400
WD40 947-982 aa
PF00400
WD40 988-1024 aa
PF00400
WD40 1029-1064 aa
PF00400
WD40 1068-1105 aa
PF00400
WD40 1180-1205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770546.1 |
Pfam | PF03456 |
uDENN | Domain | 35 | 103 | 6.6e-12 | 46.4 | uDENN domain |
XP_057770546.1 |
Pfam | PF02141 |
DENN | Family | 123 | 305 | 6.7e-42 | 144.1 | DENN (AEX-3) domain |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 851 | 899 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 907 | 941 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 947 | 982 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 988 | 1024 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 1029 | 1064 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 1068 | 1105 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
XP_057770546.1 |
Pfam | PF00400 |
WD40 | Repeat | 1180 | 1205 | 1.3e-38 | 130.5 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。