Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001704`

染色体: Chr06 坐标: 19586192-19593453 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001704`
名称	SmilChr06G001704
描述	uncharacterized SmilChr06G001704
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19586192 - 19593453 / `+`

ID 对照

NCBI Gene ID	`LOC130990355`
GeneID	`130990355`
locus_tag	`-`
NCBI Name	`LOC130990355`
原始查询	`LOC130990355`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833737]; symbol=AT5G37590; hit=AT5G37590; species=arabidopsis; confidence=high
产物	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833737]; symbol=AT5G37590; hit=AT5G37590; species=arabidopsis; confidence=high
Arabidopsis	`AT5G37590` (AT5G37590) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833737] identity=58.9; qcov=0.907; evalue=2.37e-159; confidence=high
Rice	`Os04g0278200` - identity=60.5; qcov=0.667; evalue=1.28e-118; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00515 (TPR_1); PF07719 (TPR_2); PF07721 (TPR_4); PF13176 (TPR_7); PF13181 (TPR_8); PF13374 (TPR_10); PF13424 (TPR_12); PF13432 (TPR_16)
InterPro	-
eggNOG	-
NR	GeneID:130990355

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057770557.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057770557.1`
3	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057770558.1`
4	Nucleus	细胞核	0.00000	`XP_057770557.1`
5	Chromosome	染色体	0.00000	`XP_057770557.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19586427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,D4
`Chr6:19587055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:19587832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr6:19587921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,C75
`Chr6:19587930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B38,B39,B44,C55
`Chr6:19587943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:19588576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A21,B26,C42,D4
`Chr6:19588578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr6:19589627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B26,C42
`Chr6:19589647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr6:19591475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,B98
`Chr6:19592303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770557.1

542 aa

271

542

TPR_16

TPR_12

TPR_10

TPR_8

TPR_7

TPR_12

TPR_2

TPR_10

TPR_1

TPR_8

TPR_12

TPR_4

TPR_7

TPR_10

PF13432 TPR_16 118-179 aa PF13424 TPR_12 120-186 aa PF13374 TPR_10 154-192 aa PF13181 TPR_8 155-184 aa PF13176 TPR_7 157-186 aa PF13424 TPR_12 197-270 aa PF07719 TPR_2 198-226 aa PF13374 TPR_10 198-236 aa PF00515 TPR_1 199-227 aa PF13181 TPR_8 199-228 aa PF13424 TPR_12 284-354 aa PF07721 TPR_4 328-348 aa PF13176 TPR_7 328-356 aa PF13374 TPR_10 328-362 aa

XP_057770558.1

421 aa

210

421

TPR_16

TPR_12

TPR_10

TPR_8

TPR_7

TPR_12

TPR_2

TPR_10

TPR_1

TPR_8

TPR_12

TPR_4

TPR_8

TPR_7

TPR_10

PF13432 TPR_16 118-180 aa PF13424 TPR_12 120-186 aa PF13374 TPR_10 154-192 aa PF13181 TPR_8 155-184 aa PF13176 TPR_7 157-186 aa PF13424 TPR_12 197-270 aa PF07719 TPR_2 198-226 aa PF13374 TPR_10 198-236 aa PF00515 TPR_1 199-227 aa PF13181 TPR_8 199-228 aa PF13424 TPR_12 284-354 aa PF07721 TPR_4 328-348 aa PF13181 TPR_8 328-355 aa PF13176 TPR_7 328-356 aa PF13374 TPR_10 328-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770557.1`	Pfam	`PF13432`	TPR_16	Repeat	118	179	3e-09	37.9	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13424`	TPR_12	Repeat	120	186	2.2e-35	121.4	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13374`	TPR_10	Repeat	154	192	5.6e-31	106.3	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13181`	TPR_8	Repeat	155	184	2.7e-14	52.8	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13176`	TPR_7	Repeat	157	186	3.6e-13	49.2	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13424`	TPR_12	Repeat	197	270	2.2e-35	121.4	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF07719`	TPR_2	Repeat	198	226	2.9e-18	65.1	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13374`	TPR_10	Repeat	198	236	5.6e-31	106.3	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF00515`	TPR_1	Repeat	199	227	1.3e-18	66.6	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13181`	TPR_8	Repeat	199	228	2.7e-14	52.8	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13424`	TPR_12	Repeat	284	354	2.2e-35	121.4	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF07721`	TPR_4	Repeat	328	348	1.9e-07	31.7	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13176`	TPR_7	Repeat	328	356	3.6e-13	49.2	Tetratricopeptide repeat
`XP_057770557.1`	Pfam	`PF13374`	TPR_10	Repeat	328	362	5.6e-31	106.3	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13432`	TPR_16	Repeat	118	180	1.1e-09	39.2	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13424`	TPR_12	Repeat	120	186	8.8e-35	119.5	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13374`	TPR_10	Repeat	154	192	1.6e-32	111.2	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13181`	TPR_8	Repeat	155	184	1.8e-14	53.3	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13176`	TPR_7	Repeat	157	186	6.6e-14	51.5	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13424`	TPR_12	Repeat	197	270	8.8e-35	119.5	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF07719`	TPR_2	Repeat	198	226	8.6e-19	66.8	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13374`	TPR_10	Repeat	198	236	1.6e-32	111.2	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF00515`	TPR_1	Repeat	199	227	1.4e-19	69.7	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13181`	TPR_8	Repeat	199	228	1.8e-14	53.3	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13424`	TPR_12	Repeat	284	354	8.8e-35	119.5	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF07721`	TPR_4	Repeat	328	348	3.6e-08	34.0	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13181`	TPR_8	Repeat	328	355	1.8e-14	53.3	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13176`	TPR_7	Repeat	328	356	6.6e-14	51.5	Tetratricopeptide repeat
`XP_057770558.1`	Pfam	`PF13374`	TPR_10	Repeat	328	362	1.6e-32	111.2	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914575.1
ACACTTCATTTCTTTTAAGAGATAATAACGCTTGATTTAATAACACAGTGAGACCTAAATTAATTTCTACACATTAGTGTGGGATGGACAAACGAGCTGCATGTTCAAATCTTCCGCTTCTTTGCTTGCACCTCTATAGGAACTGTTGATGTCCACGAAATCTAGCAAGGAAACGAGATTTTCGGTGAGAGATTGCATCTGCTTGTTGTAAGAAATGTCTTTCCGGCAAGCAGTTCGTAAATTGTGTAAGGGACTTGCTA...

XM_057914574.1
TTCATTTCTTTTAAGAGATAATAACGCTTGATTTAATAACACAGTGAGACCTAAATTAATTTCTACACATTAGTGTGGGATGGACAAACGAGCTGCATGTTCAAATCTTCCGCTTCTTTGCTTGCACCTCTATAGGAACTGTTGATGTCCACGAAATCTAGCAAGGAAACGAGATTTTCGGTGAGAGATTGCATCTGCTTGTTGTAAGAAATGTCTTTCCGGCAAGCAGTTCGTAAATTGTGTAAGGGACTTGCTAATTC...

CDS

2 records

下载 CDS FASTA

LOC130990355
ATGTCTTTCCGGCAAGCAGTTCGTAAATTGTGTAAGGGACTTGCTAATTCTGCATCACTACAGACTAAAGCCTACAATTTTCTTCCAAATGCAGGAAAGCTGATTGGTTCTAGTGAATATGAACTTGGAGGTCATACACGGACTAAATGCCGCTTGGAATTACTTCAATGGCTTTTCCTGTCCGGACAAGCTGCATTTATTGTTGGGGCATGTTCATCACCTTCCATGGCAGAAGATGTATCAACAAGTTCTAAAAATGA...

Protein

2 records

下载 Protein FASTA

XP_057770557.1
MSFRQAVRKLCKGLANSASLQTKAYNFLPNAGKLIGSSEYELGGHTRTKCRLELLQWLFLSGQAAFIVGACSSPSMAEDVSTSSKNDTSKDDFSGLRKVEDGSVISNEHTSKWRVFTDNGRDHFSKGNIDQAERFFLSALHEAKEGFGERDPHVASACNNLAELYRVTKDFDKAEPLYVEAINILEDYFGVNDVRVGAALHNLGHVYLVQRKLEKARVCYERALKIKRRVLGEAHTEYADTMYHLGTVLYLQGKEKDAED...

XP_057770558.1
MSFRQAVRKLCKGLANSASLQTKAYNFLPNAGKLIGSSEYELGGHTRTKCRLELLQWLFLSGQAAFIVGACSSPSMAEDVSTSSKNDTSKDDFSGLRKVEDGSVISNEHTSKWRVFTDNGRDHFSKGNIDQAERFFLSALHEAKEGFGERDPHVASACNNLAELYRVTKDFDKAEPLYVEAINILEDYFGVNDVRVGAALHNLGHVYLVQRKLEKARVCYERALKIKRRVLGEAHTEYADTMYHLGTVLYLQGKEKDAED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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