Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001712`

染色体: Chr06 坐标: 19703720-19717214 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001712`
名称	SmilChr06G001712
描述	serine protease SPPA, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19703720 - 19717214 / `+`

ID 对照

NCBI Gene ID	`LOC130990364`
GeneID	`130990364`
locus_tag	`-`
NCBI Name	`LOC130990364`
原始查询	`LOC130990364`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine protease SPPA, chloroplastic-like
产物	serine protease SPPA%2C chloroplastic-like
Arabidopsis	`AT1G73990` (SPPA) signal peptide peptidase [Source:NCBI gene (formerly Entrezgene);Acc:843737] identity=65; qcov=0.993; evalue=0; confidence=high
Rice	`Os02g0728100` (OsProtIV1) - identity=65; qcov=0.982; evalue=0; confidence=high
GO	GO:0006465 (GO:0006465); GO:0008233 (peptidase activity); GO:0016020 (membrane)
KEGG	-
Pfam	PF01343 (Peptidase_S49)
InterPro	-
eggNOG	-
NR	GeneID:130990364

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057770567.1`
2	Peroxisome	过氧化物酶体	0.60000	`XP_057770568.1`
3	Mitochondrion	线粒体	0.40000	`XP_057770567.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057770567.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057770568.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19703803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,D6
`Chr6:19704036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr6:19704109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:19704627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B26,C42
`Chr6:19704629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr6:19706456`	`TG`	`T`	1bp_deletion	frameshift_variant	4	B113,B56,B66,B98
`Chr6:19706456`	`TG`	`T`	1bp_deletion	CDS_variant	4	B113,B56,B66,B98
`Chr6:19706508`	`C`	`T`	EMS_canonical_SNV	stop_gained	23	A1,A13,B10,B108,B13,B130,B15,B19,B22,B36,B70,B74,B81,B85,B94,C12,C29,C32,C45,C68,C79,D2,D7
`Chr6:19706715`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	D10
`Chr6:19706715`	`TTA`	`T`	2bp_deletion	CDS_variant	1	D10
`Chr6:19708857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:19714429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770567.1

647 aa

324

647

Peptidase_S49

PF01343 Peptidase_S49 166-313 aa PF01343 Peptidase_S49 416-567 aa

XP_057770568.1

437 aa

218

437

Peptidase_S49

PF01343 Peptidase_S49 5-103 aa PF01343 Peptidase_S49 206-357 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770567.1`	Pfam	`PF01343`	Peptidase_S49	Family	166	313	9.6e-68	227.7	Peptidase family S49
`XP_057770567.1`	Pfam	`PF01343`	Peptidase_S49	Family	416	567	9.6e-68	227.7	Peptidase family S49
`XP_057770568.1`	Pfam	`PF01343`	Peptidase_S49	Family	5	103	6.7e-57	192.5	Peptidase family S49
`XP_057770568.1`	Pfam	`PF01343`	Peptidase_S49	Family	206	357	6.7e-57	192.5	Peptidase family S49

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914584.1
AAAAAAGGCAAAGCACTACATTCCAAGTTGCGGATTCTTTACATATTGTATACCAACAGGGAGAGAGAGAATCAATGTCGAAGCTTCTGTTACGCTGCGGTCGCCACTTCAGCTCTCTCTCACTTGATCACTCGGCCACTGCCATACCCGGCCGCCTCTATCTAACCACCCCTCATTTCCGAGTTTATTCAACTCACGGCAATGGAGAAACAAAGCCGGATACGGCGAGCGGCGGCAATGGCAATGCGTATGATGACGGC...

XM_057914585.1
GGCAAGTATCCCACCGGAGACTTCGTCTTCAGGCCGCGCACCGCGTGGGAGGATTTTTTGGTTAAGACTAGACTTTTCTTCGCTTTGCCTTGGCGACGCTTCCAGAGCGGCAGTGTTCTCAAGATAGTTCTTCGCGGCGAGATCAGCTGAGGAGCTTTTCCAGGGCACTATCATTGCCTCAAATTTGTGGGAATTTTGAAAAAGCCGCTTATGATCCTCGTGTAGCAGGCATTTACCTCCATATTGATAACTTGAGTTGT...

CDS

2 records

下载 CDS FASTA

LOC130990364
ATGTCGAAGCTTCTGTTACGCTGCGGTCGCCACTTCAGCTCTCTCTCACTTGATCACTCGGCCACTGCCATACCCGGCCGCCTCTATCTAACCACCCCTCATTTCCGAGTTTATTCAACTCACGGCAATGGAGAAACAAAGCCGGATACGGCGAGCGGCGGCAATGGCAATGCGTATGATGACGGCAAGTATCCCACCGGAGACTTCGTCTTCAGGCCGCGCACCGCGTGGGAGGATTTTTTGGTTAAGACTAGACTTTT...

LOC130990364
ATGCCCTCACATGGTGTGCTTGAGAAAATTGGGGTTGAGGCGCAAGTTGAACGGGTTGGGAAATACAAAAGTGTCGGAGACCAACTCACACGTAAAAGCATGTCTGATGAGAATCGTGAAATGCTGACTTCTTTGCTTGATAACATCTACAGCAATTGGCTTGACAAAATTTCACTTGCAAAAGGGAAACAAAAGGGAGATATTGAAAATTTTATTAATGAAGGATCACACCAAGTTGAGAGAATGAAAAAAGAAGGATT...

Protein

2 records

下载 Protein FASTA

XP_057770567.1
MSKLLLRCGRHFSSLSLDHSATAIPGRLYLTTPHFRVYSTHGNGETKPDTASGGNGNAYDDGKYPTGDFVFRPRTAWEDFLVKTRLFFALPWRRFQSGSVLKIVLRGEITDQLRSFSRALSLPQICGNFEKAAYDPRVAGIYLHIDNLSCGWGKLDEIRRHILDFKKSGKFIIGYVPTCGVKEYYIGSACEELYAPPSAYVGLYGFVVQASFLSGVLEKIGVEAQVERVGKYKSVGDQLTRKSMSDENREMLTSLLDNIY...

XP_057770568.1
MPSHGVLEKIGVEAQVERVGKYKSVGDQLTRKSMSDENREMLTSLLDNIYSNWLDKISLAKGKQKGDIENFINEGSHQVERMKKEGLITDIKYEDEVMALLRTRLGIPNTKLLPTVGYRKYCNVRRSTLGLIGSKDLIAIIRASGSISRTQGQLNIPSSRIIAEQFIQKIRRVKESKKYKAVIIRIDSPGGDALASDLMWREIKLLAAAKPVIASMSDVAASGGYYMAMAADVIVAEKLSLTGSIGVVTGKFNLGKLYEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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