Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001715`

染色体: Chr06 坐标: 19746147-19756995 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001715`
名称	SmilChr06G001715
描述	inorganic pyrophosphatase TTM1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19746147 - 19756995 / `-`

ID 对照

NCBI Gene ID	`LOC130990367`
GeneID	`130990367`
locus_tag	`-`
NCBI Name	`LOC130990367`
原始查询	`LOC130990367`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inorganic pyrophosphatase TTM1-like
产物	inorganic pyrophosphatase TTM1-like
Arabidopsis	`AT1G73980` (AT1G73980) Phosphoribulokinase / Uridine kinase family [Source:NCBI gene (formerly Entrezgene);Acc:843736] identity=72.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0708200` - identity=72; qcov=1.02; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016301 (kinase activity)
KEGG	smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00485 (PRK); PF01928 (CYTH)
InterPro	-
eggNOG	-
NR	GeneID:130990367

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057770571.1`
2	Mitochondrion membrane	线粒体膜	0.60000	`XP_057770571.1`
3	Mitochondrion outer membrane	线粒体外膜	0.60000	`XP_057770571.1`
4	Cytoplasm	细胞质	0.40000	`XP_057770572.1`
5	Cytosol	细胞质基质	0.20000	`XP_057770571.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19746348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:19746386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:19748512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,C14
`Chr6:19749915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D4
`Chr6:19750497`	`A`	`AG`	1bp_insertion	frameshift_variant	1	B69
`Chr6:19750497`	`A`	`AG`	1bp_insertion	CDS_variant	1	B69
`Chr6:19751265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr6:19751406`	`GT`	`G`	1bp_deletion	frameshift_variant	2	B130,C29
`Chr6:19751406`	`GT`	`G`	1bp_deletion	CDS_variant	2	B130,C29
`Chr6:19754870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770571.1

660 aa

330

660

PRK

CYTH

PF00485 PRK 69-237 aa PF01928 CYTH 252-405 aa

XP_057770572.1

635 aa

318

635

PRK

CYTH

PF00485 PRK 69-237 aa PF01928 CYTH 252-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770571.1`	Pfam	`PF00485`	PRK	Domain	69	237	4.7e-26	92.5	Phosphoribulokinase / Uridine kinase family
`XP_057770571.1`	Pfam	`PF01928`	CYTH	Domain	252	405	1.8e-21	77.5	CYTH domain
`XP_057770572.1`	Pfam	`PF00485`	PRK	Domain	69	237	4.3e-26	92.7	Phosphoribulokinase / Uridine kinase family
`XP_057770572.1`	Pfam	`PF01928`	CYTH	Domain	252	405	1.7e-21	77.6	CYTH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914588.1
GACCATATCTGAAATATTCCATCAACTGTCAAAACCACTTTAAACCCATGACAAAGACAACAGAGCTTGAAGGGCACGAACAAAAATATCCAAACAAACTTTTGTGAGACAGTTGGAAAGATCAAAACCCATTTGACTTTTCAATACGATTTATGCTACATCACTTCCATTTCTCTGGAACTCAGCTGCAATCCAGTTCTTGTTGTTAAGTGAAAGTTTTGCACTGTTAGAGATTTTTGTCATCTTCAGTATGACTCAGG...

XM_057914589.1
GTCAAAACCACTTTAAACCCATGACAAAGACAACAGAGCTTGAAGGGCACGAACAAAAATATCCAAACAAACTTTTGTGAGACAGTTGGAAAGATCAAAACCCATTTGACTTTTCAATACGATTTATGCTACATCACTTCCATTTCTCTGGAACTCAGCTGCAATCCAGTTCTTGTTGTTAAGTGAAAGTTTTGCACTGTTAGAGATTTTTGTCATCTTCAGTATGACTCAGGATACTCTTCCTAGTGCTGAATCACCCA...

CDS

2 records

下载 CDS FASTA

LOC130990367
ATGACTCAGGATACTCTTCCTAGTGCTGAATCACCCAGGAGACGGTCTGGCCTATTGAGAGATCAAGTTCAGATCATTAAGAGAAAGGATACTGATCGTTTTGAGATTGCTCCCATCCAAGATCCACTATCATTCGAAAAGGGTTTCTTTGTATTTGTCCGTGCTTGCCAATTATTGGCTCAGAAGAATGAAGGGATGGTATTAGTGGGGGTGGCAGGTCCTTCTGGAGCCGGGAAGACGGTGTTCACTGAGAAGATCCT...

Protein

2 records

下载 Protein FASTA

XP_057770571.1
MTQDTLPSAESPRRRSGLLRDQVQIIKRKDTDRFEIAPIQDPLSFEKGFFVFVRACQLLAQKNEGMVLVGVAGPSGAGKTVFTEKILTFMPSIAVINMDNYNDASRIIDGNFDDPRLTDYDTLLENIRGLKSGSAVQIPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRPV...

XP_057770572.1
MTQDTLPSAESPRRRSGLLRDQVQIIKRKDTDRFEIAPIQDPLSFEKGFFVFVRACQLLAQKNEGMVLVGVAGPSGAGKTVFTEKILTFMPSIAVINMDNYNDASRIIDGNFDDPRLTDYDTLLENIRGLKSGSAVQIPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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