Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001731`

染色体: Chr06 坐标: 19931637-19933852 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001731`
名称	SmilChr06G001731
描述	60S ribosomal protein L7-2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19931637 - 19933852 / `+`

ID 对照

NCBI Gene ID	`LOC130990383`
GeneID	`130990383`
locus_tag	`-`
NCBI Name	`LOC130990383`
原始查询	`LOC130990383`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	60S ribosomal protein L7-2-like
产物	60S ribosomal protein L7-2-like
Arabidopsis	`AT2G01250` (AT2G01250) Ribosomal protein L30/L7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814652] identity=83.5; qcov=0.971; evalue=2.76e-147; confidence=high
Rice	`Os04g0605900` (rpl7) - identity=76; qcov=0.996; evalue=7e-137; confidence=high
GO	GO:0000463 (maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0022625 (cytosolic large ribosomal subunit)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00327 (Ribosomal_L30); PF08079 (Ribosomal_L30_N)
InterPro	-
eggNOG	-
NR	GeneID:130990383

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057770603.1`
2	Nucleolus	核仁	0.40000	`XP_057770603.1`
3	Nucleus	细胞核	0.20000	`XP_057770603.1`
4	Chromosome	染色体	0.00000	`XP_057770603.1`
5	Centromere	着丝粒	0.00000	`XP_057770603.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19932354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:19932399`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B78
`Chr6:19932399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr6:19932522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:19932669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:19932695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr6:19933585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770603.1

243 aa

122

243

Ribosomal_L30_N

Ribosomal_L30

PF08079 Ribosomal_L30_N 9-79 aa PF00327 Ribosomal_L30 85-135 aa

XP_057770604.1

243 aa

122

243

Ribosomal_L30_N

Ribosomal_L30

PF08079 Ribosomal_L30_N 9-79 aa PF00327 Ribosomal_L30 85-135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770603.1`	Pfam	`PF08079`	Ribosomal_L30_N	Domain	9	79	4.8e-22	78.8	Ribosomal L30 N-terminal domain
`XP_057770603.1`	Pfam	`PF00327`	Ribosomal_L30	Domain	85	135	4.3e-18	65.6	Ribosomal protein L30p/L7e
`XP_057770604.1`	Pfam	`PF08079`	Ribosomal_L30_N	Domain	9	79	4.8e-22	78.8	Ribosomal L30 N-terminal domain
`XP_057770604.1`	Pfam	`PF00327`	Ribosomal_L30	Domain	85	135	4.3e-18	65.6	Ribosomal protein L30p/L7e

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914620.1
ACGGCTACGATTCAAGGGATATTTTTCAGCTGATAACAGCCGTCTATAAGATTATTCTTCAAAACATAAAACCCTAGTTTTTTACTCCTTTTCAATAAATCTGCTTCAAATCAGTTTCTCCCTACAACCCCTCACCCCACCGCGGCCGCCGCCAGCGCCACTTCCACTGCATTGCCGGAAAATCGTTATCGATGGCTGAGAAGGGAGGACAAATTGTTCCTGAGTCTGTTTTAAAGAAACAGAAGAGAGCCGAGGAATGG...

XM_057914621.1
ATTTTTCAGCTGATAACAGCCGTCTATAAGATTATTCTTCAAAACATAAAACCCTAGTTTTTTACTCCTTTTCAATAAATCTGCTTCAAATCAGTTTCTCCCTACAACCCCTCACCCCACCGCGGCCGCCGCCAGCGCCACTTCCACTGCATTGCCGGAAAATCGTTATCGTAGGCACCGATGGCTGAGAAGGGAGGACAAATTGTTCCTGAGTCTGTTTTAAAGAAACAGAAGAGAGCCGAGGAATGGGCCTTGGTCAA...

CDS

2 records

下载 CDS FASTA

LOC130990383
ATGGCTGAGAAGGGAGGACAAATTGTTCCTGAGTCTGTTTTAAAGAAACAGAAGAGAGCCGAGGAATGGGCCTTGGTCAAAAGGCAGGAGGTTGGAGCTCTCAAGGAAAAGAAGGCTGCAAACAGGAAGCTGATCTTCAACAGAGCTAAGGACTATGCGAAGCAGTATGCCGAGCAGGAGAGGGAGCTCATTCAATTGAAGCGTGAGGCGAGGTTGAAAGGAGGATTCTATGTTAACCCGGAAGCAAAGTTGCTGTTCAT...

Protein

2 records

下载 Protein FASTA

XP_057770603.1
MAEKGGQIVPESVLKKQKRAEEWALVKRQEVGALKEKKAANRKLIFNRAKDYAKQYAEQERELIQLKREARLKGGFYVNPEAKLLFIIRIRGINAMHPTTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKHGIICIEDLIHEILTVGPHFKEANNFLWPFQLSAPLGGLQRKRNHYVEGGDAGNREDYINELIRRMN

XP_057770604.1
MAEKGGQIVPESVLKKQKRAEEWALVKRQEVGALKEKKAANRKLIFNRAKDYAKQYAEQERELIQLKREARLKGGFYVNPEAKLLFIIRIRGINAMHPTTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKHGIICIEDLIHEILTVGPHFKEANNFLWPFQLSAPLGGLQRKRNHYVEGGDAGNREDYINELIRRMN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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