当前解析结果
SmilChr06G001737| 统一新 Gene ID | SmilChr06G001737 |
|---|---|
| 名称 | SmilChr06G001737 |
| 描述 | uncharacterized SmilChr06G001737 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20033971 - 20035241 / - |
| NCBI Gene ID | LOC130990388 |
|---|---|
| GeneID | 130990388 |
| locus_tag | - |
| NCBI Name | LOC130990388 |
| 原始查询 | LOC130990388 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=medium |
| 产物 | nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G03820 (NMD3)nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908] identity=43.1; qcov=0.963; evalue=2.34e-79; confidence=medium |
| Rice | Os10g0573900 (OsNMD3)- identity=39; qcov=0.941; evalue=8.11e-68; confidence=medium |
| GO | GO:0000055 (ribosomal large subunit export from nucleus); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0043023 (ribosomal large subunit binding) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF21192 (OB_NMD3); PF21193 (NMD_SH3); PF29994 (NMD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990388 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770610.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057770610.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770610.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770610.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770610.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20034360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr6:20034495 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | B113,B132,B15,B8,C3,C46,C48,C7 |
Chr6:20034506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr6:20034710 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:20034782 |
A |
ATC |
2bp_insertion | frameshift_variant | 3 | B135,B22,C25 |
Chr6:20034782 |
A |
ATC |
2bp_insertion | CDS_variant | 3 | B135,B22,C25 |
Chr6:20034784 |
TGA |
T |
2bp_deletion | frameshift_variant | 3 | B135,B22,C25 |
Chr6:20034784 |
TGA |
T |
2bp_deletion | CDS_variant | 3 | B135,B22,C25 |
Chr6:20034844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:20034911 |
A |
AGT |
2bp_insertion | frameshift_variant | 22 | B1,B112,B119,B22,B24,B30,B31,B32,B34,B4,B48,B69,B7,C15,C17,C21,C25,C30,C46,C53,C79,C87 |
Chr6:20034929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:20035164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770610.1PF29994
NMD3_N 18-144 aa
PF21193
NMD_SH3 144-181 aa
PF21192
OB_NMD3 201-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770610.1 |
Pfam | PF29994 |
NMD3_N | Domain | 18 | 144 | 2.3e-35 | 122.7 | NMD3, N-terminal domain |
XP_057770610.1 |
Pfam | PF21193 |
NMD_SH3 | Domain | 144 | 181 | 6.1e-13 | 49.4 | NMD3 SH3 domain |
XP_057770610.1 |
Pfam | PF21192 |
OB_NMD3 | Domain | 201 | 290 | 2.4e-30 | 105.4 | NMD3 OB-fold domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。