当前解析结果
SmilChr06G000621| 统一新 Gene ID | SmilChr06G000621 |
|---|---|
| 名称 | SmilChr06G000621 |
| 描述 | uncharacterized SmilChr06G000621 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5467182 - 5468782 / + |
| NCBI Gene ID | LOC130990394 |
|---|---|
| GeneID | 130990394 |
| locus_tag | - |
| NCBI Name | LOC130990394 |
| 原始查询 | LOC130990394 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101]; symbol=AT2G16040; hit=AT2G16040; species=arabidopsis; confidence=medium |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101]; symbol=AT2G16040; hit=AT2G16040; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G16040 (AT2G16040)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101] identity=42.9; qcov=0.923; evalue=2.72e-38; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990394 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770617.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057770617.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057770617.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770617.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5467344 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B124,C25 |
Chr6:5467344 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B124,C25 |
Chr6:5467348 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C45 |
Chr6:5467348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr6:5467364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B86,C6 |
Chr6:5467369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B40,C18,C49,C82 |
Chr6:5467377 |
AT |
A |
1bp_deletion | frameshift_variant | 15 | A1,A20,B113,B124,B26,B29,B45,B84,B95,B96,C21,C4,C50,C59,C71 |
Chr6:5467438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A20,B127,C57 |
Chr6:5467445 |
T |
TTC |
2bp_insertion | frameshift_variant | 31 | A2,A8,B119,B121,B15,B2,B42,B43,B53,B57,B64,B65,B68,B72,B76,B83,B88,B9,B94,C15,C16,C22,C27,C45,C59,C61,C63,C67,C85,D1,D4 |
Chr6:5467479 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A22,B130,B132,B86,C6,C83 |
Chr6:5467485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B130,B86 |
Chr6:5467517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B64,C49 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。