Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003155`

染色体: Chr01 坐标: 50338570-50344717 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003155`
名称	SmilChr01G003155
描述	AT-rich interactive domain-containing protein 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50338570 - 50344717 / `+`

ID 对照

NCBI Gene ID	`LOC130990437`
GeneID	`130990437`
locus_tag	`-`
NCBI Name	`LOC130990437`
原始查询	`LOC130990437`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT-rich interactive domain-containing protein 4-like
产物	AT-rich interactive domain-containing protein 4-like
Arabidopsis	`AT3G43240` (AT3G43240) ARID/BRIGHT DNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:823399] identity=62.3; qcov=1; evalue=0; confidence=high
Rice	`Os08g0451400` (OsARID4) - identity=58.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF01388 (ARID)
InterPro	-
eggNOG	-
NR	GeneID:130990437

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770655.1`
2	Chromosome	染色体	0.00000	`XP_057770655.1`
3	Centromere	着丝粒	0.00000	`XP_057770655.1`
4	Chromatin	染色质	0.00000	`XP_057770655.1`
5	Telomere	端粒	0.00000	`XP_057770655.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50339758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr1:50339759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B119,B121,B140,C17
`Chr1:50339768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B69
`Chr1:50341282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:50341285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:50341867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B140,C17
`Chr1:50342182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:50342194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:50342374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C41
`Chr1:50342761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr1:50342838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B119,B121,B140,C17
`Chr1:50343177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770655.1

769 aa

384

769

ARID

PF01388 ARID 594-691 aa

XP_057770660.1

769 aa

384

769

ARID

PF01388 ARID 594-691 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770655.1`	Pfam	`PF01388`	ARID	Domain	594	691	9.5e-13	49.1	ARID/BRIGHT DNA binding domain
`XP_057770660.1`	Pfam	`PF01388`	ARID	Domain	594	691	9.5e-13	49.1	ARID/BRIGHT DNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914677.1
GGGAAAAAGTGGAGAAGAATTTAAACAGTGTTAAACTCAAACATAAGATTTGGTTGGCTGACGAAATTGAAATGTAGTTTGACTTTGATAATCCAAAAATATTGCTGCATTAAAGCTGACACAATAATAATAGCACACAAATTCAACTTAACAAATACAGGATTCAAGTTATGAAAAAAATTTAGTTTATTGCCACATTATATTAAAGATTAAAGATTTCCCTTTTTTTTTCGGAGGGTGATGATTTAGCGGTGGATAGA...

XM_057914672.1
GGGAAAAAGTGGAGAAGAATTTAAACAGTGTTAAACTCAAACATAAGATTTGGTTGGCTGACGAAATTGAAATGTAGTTTGACTTTGATAATCCAAAAATATTGCTGCATTAAAGCTGACACAATAATAATAGCACACAAATTCAACTTAACAAATACAGGATTCAAGTTATGAAAAAAATTTAGTTTATTGCCACATTATATTAAAGATTAAAGATTTCCCTTTTTTTTTCGGAGGGTGATGATTTAGCGGTGGATAGA...

CDS

2 records

下载 CDS FASTA

LOC130990437
ATGTTCCACACCCAAGGAGCTCTGAAACACACTTGCAATCTCCTCGCCGTCGTGTGCTCGGAGCCAGCAGAGAGTAAGCGGCATAATGATGCTTTGGAGGAGGAGAAGAGGAGGTTCCCCTTCCCGGAAATTGCATCTTCGGGGCGTTTAGAGGTCCAAACGTTGAAGAATCCATCACCGGATGAATTCCGCAAGGCTCTTGATTCGTGGCAGCCGAATCTTGTGTACTTGCAAGGGAAACAGTTGGAGAACGAGGAGGT...

Protein

2 records

下载 Protein FASTA

XP_057770655.1
MFHTQGALKHTCNLLAVVCSEPAESKRHNDALEEEKRRFPFPEIASSGRLEVQTLKNPSPDEFRKALDSWQPNLVYLQGKQLENEEVGSISWGGVELSSPEAVSGLFSSTMPTTVYLEVPNGEKLAKSLHSKGVSYVIYWKNSFSCYAASHFRNALLSVIQSSSCHTWDAFQLADASFRLYCLRNNCVLPDGEKVDDELGPNLFGEPPRITIDIPEIEDAGEDEESTSGSLPAIKIYDDDVNMRFLICGMASSLDARLLS...

XP_057770660.1
MFHTQGALKHTCNLLAVVCSEPAESKRHNDALEEEKRRFPFPEIASSGRLEVQTLKNPSPDEFRKALDSWQPNLVYLQGKQLENEEVGSISWGGVELSSPEAVSGLFSSTMPTTVYLEVPNGEKLAKSLHSKGVSYVIYWKNSFSCYAASHFRNALLSVIQSSSCHTWDAFQLADASFRLYCLRNNCVLPDGEKVDDELGPNLFGEPPRITIDIPEIEDAGEDEESTSGSLPAIKIYDDDVNMRFLICGMASSLDARLLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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