当前解析结果
SmilChr06G000987| 统一新 Gene ID | SmilChr06G000987 |
|---|---|
| 名称 | SmilChr06G000987 |
| 描述 | uncharacterized SmilChr06G000987 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 9656949 - 9659585 / + |
| NCBI Gene ID | LOC130990465 |
|---|---|
| GeneID | 130990465 |
| locus_tag | - |
| NCBI Name | LOC130990465 |
| 原始查询 | LOC130990465 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=30.8; qcov=0.117; evalue=2.09e-06; confidence=weak |
| Rice | Os08g0202300- identity=24; qcov=0.33; evalue=9.82e-20; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990465 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770680.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770680.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057770680.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770680.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770680.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:9656957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B4,C12 |
Chr6:9656972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr6:9657005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:9657017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:9657022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B16,C17 |
Chr6:9657023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B52,C54,D6 |
Chr6:9657029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B96,C54 |
Chr6:9657092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B4,C12 |
Chr6:9657098 |
C |
CG |
1bp_insertion | frameshift_variant | 3 | B103,B4,C12 |
Chr6:9657098 |
C |
CG |
1bp_insertion | CDS_variant | 3 | B103,B4,C12 |
Chr6:9657100 |
TGC |
T |
2bp_deletion | frameshift_variant | 3 | B103,B4,C12 |
Chr6:9657100 |
TGC |
T |
2bp_deletion | CDS_variant | 3 | B103,B4,C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770680.1PF00078
RVT_1 8-96 aa
PF17919
RT_RNaseH_2 113-211 aa
PF17917
RT_RNaseH 141-240 aa
PF13456
RVT_3 276-394 aa
PF17921
Integrase_H2C2 433-481 aa
PF00665
rve 499-596 aa
PF31073
DUF8803 720-780 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770680.1 |
Pfam | PF00078 |
RVT_1 | Domain | 8 | 96 | 2.6e-20 | 73.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057770680.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 113 | 211 | 6.2e-19 | 68.6 | RNase H-like domain found in reverse transcriptase |
XP_057770680.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 141 | 240 | 5.1e-15 | 56.2 | RNase H-like domain found in reverse transcriptase |
XP_057770680.1 |
Pfam | PF13456 |
RVT_3 | Domain | 276 | 394 | 5e-15 | 56.2 | Reverse transcriptase-like |
XP_057770680.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 433 | 481 | 3.7e-09 | 37.3 | Integrase zinc binding domain |
XP_057770680.1 |
Pfam | PF00665 |
rve | Domain | 499 | 596 | 3.8e-20 | 72.8 | Integrase core domain |
XP_057770680.1 |
Pfam | PF31073 |
DUF8803 | Domain | 720 | 780 | 3.3e-23 | 82.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。