当前解析结果
SmilChr06G001489| 统一新 Gene ID | SmilChr06G001489 |
|---|---|
| 名称 | SmilChr06G001489 |
| 描述 | zeatin O-glucosyltransferase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 15889029 - 15890447 / + |
| NCBI Gene ID | LOC130990566 |
|---|---|
| GeneID | 130990566 |
| locus_tag | - |
| NCBI Name | LOC130990566 |
| 原始查询 | LOC130990566 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zeatin O-glucosyltransferase-like |
| 产物 | zeatin O-glucosyltransferase-like |
| Arabidopsis | AT3G50740 (UGT72E1)UDP-glucosyl transferase 72E1 [Source:NCBI gene (formerly Entrezgene);Acc:824238] identity=32; qcov=1.02; evalue=1.85e-55; confidence=low |
| Rice | Os04g0565400 (CZOGT3)- identity=39.5; qcov=1.03; evalue=2.6e-101; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990566 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770770.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057770770.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770770.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770770.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770770.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:15889082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr6:15889307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr6:15889339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr6:15889392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B2,B93,C85 |
Chr6:15889445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr6:15889571 |
T |
TTA |
2bp_insertion | stop_gained,frameshift_variant | 1 | A5 |
Chr6:15889571 |
T |
TTA |
2bp_insertion | CDS_variant | 1 | A5 |
Chr6:15889573 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | A5 |
Chr6:15889573 |
CA |
C |
1bp_deletion | CDS_variant | 1 | A5 |
Chr6:15889756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B2,B78,B82,C85 |
Chr6:15889772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:15889809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770770.1PF26168
Glyco_transf_N 15-252 aa
PF00201
UDPGT 272-399 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770770.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 15 | 252 | 1.8e-61 | 208.8 | Glycosyltransferase, N-terminal domain |
XP_057770770.1 |
Pfam | PF00201 |
UDPGT | Family | 272 | 399 | 1e-21 | 78.1 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。