当前解析结果
SmilChr06G001621| 统一新 Gene ID | SmilChr06G001621 |
|---|---|
| 名称 | SmilChr06G001621 |
| 描述 | uncharacterized SmilChr06G001621 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 18049019 - 18049830 / + |
| NCBI Gene ID | LOC130990596 |
|---|---|
| GeneID | 130990596 |
| locus_tag | - |
| NCBI Name | LOC130990596 |
| 原始查询 | LOC130990596 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=32.3; qcov=0.416; evalue=6.94e-12; confidence=low |
| Rice | Os02g0463725- identity=34.9; qcov=0.445; evalue=1.58e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990596 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770802.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770802.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770802.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770802.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770802.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:18049048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C4 |
Chr6:18049064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B41,B48,B96,C53 |
Chr6:18049076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr6:18049085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B41,B48,B96,C53 |
Chr6:18049091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:18049093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C83 |
Chr6:18049101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr6:18049107 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B48,C53 |
Chr6:18049107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C53 |
Chr6:18049111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr6:18049136 |
G |
GA |
1bp_insertion | frameshift_variant | 13 | A14,A23,B100,B106,B113,B130,B54,B71,C29,C52,C54,C65,C9 |
Chr6:18049199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。